From 19a2b9f985f35f504cc987d1d4ced94ed484af1f Mon Sep 17 00:00:00 2001 From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com> Date: Wed, 25 Mar 2026 04:01:33 -0700 Subject: [PATCH 1/2] Update workflow and dependencies to use external referenced packages --- bonsai/Bonsai.config | 11 +- pyproject.toml | 3 +- schema/aind_behavior_dynamic_foraging.json | 126 +- src/Extensions.csproj | 7 +- .../AindBehaviorDynamicForaging.Generated.cs | 5326 +++-------------- src/Extensions/Hardware.bonsai | 70 +- uv.lock | 1139 ++-- 7 files changed, 1713 insertions(+), 4969 deletions(-) diff --git a/bonsai/Bonsai.config b/bonsai/Bonsai.config index 70934cf..fd9f98e 100644 --- a/bonsai/Bonsai.config +++ b/bonsai/Bonsai.config @@ -1,8 +1,9 @@  - - + + + @@ -77,6 +78,7 @@ + @@ -118,8 +120,9 @@ - - + + + diff --git a/pyproject.toml b/pyproject.toml index a66bb13..1c576b6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,7 +19,7 @@ version = "0.0.2rc23" readme = {file = "README.md", content-type = "text/markdown"} dependencies = [ - "aind_behavior_services>=0.13.2", + "aind_behavior_services>=0.13.5", "pydantic-settings", ] @@ -71,4 +71,3 @@ ignore-words-list = 'nd' [tool.uv] default-groups = ['dev'] required-version = '>=0.8.4' - diff --git a/schema/aind_behavior_dynamic_foraging.json b/schema/aind_behavior_dynamic_foraging.json index 09e5da4..6cfb211 100644 --- a/schema/aind_behavior_dynamic_foraging.json +++ b/schema/aind_behavior_dynamic_foraging.json @@ -3,7 +3,7 @@ "AindDynamicForagingRig": { "properties": { "aind_behavior_services_pkg_version": { - "default": "0.13.2", + "default": "0.13.5", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" @@ -195,7 +195,7 @@ "title": "Rng Seed" }, "aind_behavior_services_pkg_version": { - "default": "0.13.2", + "default": "0.13.5", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" @@ -324,7 +324,8 @@ "port_name" ], "title": "AindManipulator", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.AindManipulator" }, "AindManipulatorCalibration": { "description": "AindManipulator calibration class", @@ -418,7 +419,8 @@ } }, "title": "AindManipulatorCalibration", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.AindManipulatorCalibration" }, "AuditorySecondaryReinforcer": { "description": "Represents an auditory secondary reinforcer.", @@ -450,7 +452,8 @@ "Y1", "Y2", "Z" - ] + ], + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.Axis" }, "AxisConfiguration": { "description": "Axis configuration", @@ -507,7 +510,8 @@ "axis" ], "title": "AxisConfiguration", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.AxisConfiguration" }, "BaseModel": { "properties": {}, @@ -590,7 +594,8 @@ } }, "title": "BetaDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.BetaDistribution" }, "BetaDistributionParameters": { "description": "Parameters for a beta distribution.\n\nDefined by alpha and beta shape parameters.", @@ -617,7 +622,8 @@ } }, "title": "BetaDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.BetaDistributionParameters" }, "BinomialDistribution": { "description": "A binomial probability distribution.\n\nModels the number of successes in a fixed number of independent\nBernoulli trials with constant success probability.", @@ -663,7 +669,8 @@ } }, "title": "BinomialDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.BinomialDistribution" }, "BinomialDistributionParameters": { "description": "Parameters for a binomial distribution.\n\nDefined by number of trials (n) and success probability (p).", @@ -691,7 +698,8 @@ } }, "title": "BinomialDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.BinomialDistributionParameters" }, "CameraController_SpinnakerCamera_": { "properties": { @@ -1050,7 +1058,8 @@ "$ref": "#/$defs/PdfDistribution" } ], - "title": "Distribution" + "title": "Distribution", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution" }, "DynamicForagingSoundCard": { "description": "A calibrated sound card for the dynamic foraging rig. This is a subclass of the HarpSoundCard that includes the sound card calibration.", @@ -1159,7 +1168,8 @@ } }, "title": "ExponentialDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.ExponentialDistribution" }, "ExponentialDistributionParameters": { "description": "Parameters for an exponential distribution.\n\nDefined by the rate parameter (inverse of mean).", @@ -1179,7 +1189,8 @@ } }, "title": "ExponentialDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.ExponentialDistributionParameters" }, "GammaDistribution": { "description": "A gamma probability distribution.\n\nGeneralizes the exponential distribution. Used for modeling\npositive continuous variables with right-skewed distributions.", @@ -1225,7 +1236,8 @@ } }, "title": "GammaDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.GammaDistribution" }, "GammaDistributionParameters": { "description": "Parameters for a gamma distribution.\n\nDefined by shape (k) and rate (\u03b8\u207b\u00b9) parameters.", @@ -1252,7 +1264,8 @@ } }, "title": "GammaDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.GammaDistributionParameters" }, "HarpBehavior": { "properties": { @@ -1574,7 +1587,8 @@ } }, "title": "LogNormalDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.LogNormalDistribution" }, "LogNormalDistributionParameters": { "description": "Parameters for a log-normal distribution.\n\nDefined by the mean and standard deviation of the underlying normal distribution.", @@ -1599,7 +1613,8 @@ } }, "title": "LogNormalDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.LogNormalDistributionParameters" }, "ManipulatorPosition": { "description": "Represents a position in the manipulator coordinate system", @@ -1628,7 +1643,8 @@ "z" ], "title": "ManipulatorPosition", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.ManipulatorPosition" }, "Measurement": { "description": "Input for water valve calibration class", @@ -1686,7 +1702,8 @@ "Microstep16", "Microstep32", "Microstep64" - ] + ], + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.MicrostepResolution" }, "MotorOperationMode": { "description": "Motor operation mode", @@ -1699,7 +1716,8 @@ "x-enumNames": [ "Quiet", "Dynamic" - ] + ], + "x-sgen-typename": "AllenNeuralDynamics.AindManipulator.MotorOperationMode" }, "NormalDistribution": { "description": "A normal (Gaussian) probability distribution.\n\nBell-shaped distribution symmetric around the mean, commonly used\nfor modeling naturally occurring random variables.", @@ -1745,7 +1763,8 @@ } }, "title": "NormalDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.NormalDistribution" }, "NormalDistributionParameters": { "description": "Parameters for a normal (Gaussian) distribution.\n\nDefined by mean (center) and standard deviation (spread).", @@ -1770,7 +1789,8 @@ } }, "title": "NormalDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.NormalDistributionParameters" }, "PdfDistribution": { "description": "A custom probability density function distribution.\n\nAllows defining arbitrary discrete distributions by specifying\nprobability values and their corresponding indices.", @@ -1820,7 +1840,8 @@ } }, "title": "PdfDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.PdfDistribution" }, "PdfDistributionParameters": { "description": "Parameters for a custom probability density function distribution.\n\nDefined by explicit probability values and their corresponding indices.\nProbabilities are automatically normalized to sum to 1.", @@ -1856,7 +1877,8 @@ } }, "title": "PdfDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.PdfDistributionParameters" }, "PoissonDistribution": { "description": "A Poisson probability distribution.\n\nModels the number of events occurring in a fixed interval of time or space\nwhen events occur independently at a constant rate.", @@ -1901,7 +1923,8 @@ } }, "title": "PoissonDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.PoissonDistribution" }, "PoissonDistributionParameters": { "description": "Parameters for a Poisson distribution.\n\nDefined by the rate parameter (average number of events).", @@ -1921,7 +1944,8 @@ } }, "title": "PoissonDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.PoissonDistributionParameters" }, "Rect": { "description": "Represents a rectangle defined by its top-left corner, width, and height.", @@ -2043,20 +2067,33 @@ "description": "Parameters of the distribution" }, "truncation_parameters": { - "const": null, "default": null, - "title": "Truncation Parameters", - "type": "null" + "description": "Truncation parameters of the distribution", + "oneOf": [ + { + "$ref": "#/$defs/TruncationParameters" + }, + { + "type": "null" + } + ] }, "scaling_parameters": { - "const": null, "default": null, - "title": "Scaling Parameters", - "type": "null" + "description": "Scaling parameters of the distribution", + "oneOf": [ + { + "$ref": "#/$defs/ScalingParameters" + }, + { + "type": "null" + } + ] } }, "title": "Scalar", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.Scalar" }, "ScalarDistributionParameter": { "description": "Parameters for a scalar (constant) distribution.\n\nRepresents a deterministic value that always returns the same number.", @@ -2075,7 +2112,8 @@ } }, "title": "ScalarDistributionParameter", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.ScalarDistributionParameter" }, "ScalingParameters": { "description": "Parameters for scaling and offsetting sampled distribution values.\nScaling is applied as (value * scale + offset).\n\nApplies linear transformation: result = (value * scale) + offset.", @@ -2094,7 +2132,8 @@ } }, "title": "ScalingParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.ScalingParameters" }, "SecondaryReinforcer": { "description": "Type of secondary reinforcer", @@ -2113,14 +2152,14 @@ "Session": { "properties": { "aind_behavior_services_pkg_version": { - "default": "0.13.2", + "default": "0.13.5", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" }, "version": { - "const": "0.13.2", - "default": "0.13.2", + "const": "0.13.5", + "default": "0.13.5", "title": "Version", "type": "string" }, @@ -2904,7 +2943,8 @@ } }, "title": "TruncationParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.TruncationParameters" }, "UniformDistribution": { "description": "A uniform probability distribution.\n\nAll values between min and max have equal probability of being sampled.", @@ -2950,7 +2990,8 @@ } }, "title": "UniformDistribution", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.UniformDistribution" }, "UniformDistributionParameters": { "description": "Parameters for a uniform distribution.\n\nDefined by minimum and maximum bounds of the distribution.", @@ -2975,7 +3016,8 @@ } }, "title": "UniformDistributionParameters", - "type": "object" + "type": "object", + "x-sgen-typename": "AllenNeuralDynamics.AindBehaviorServices.Distributions.UniformDistributionParameters" }, "VideoWriter": { "discriminator": { @@ -3203,7 +3245,7 @@ "default": true, "description": "Whether uncollected rewards carry over to the next trial.", "title": "Is Baiting", - "type": "integer" + "type": "boolean" }, "trial_generation_end_parameters": { "$ref": "#/$defs/WarmupTrialGenerationEndConditions", diff --git a/src/Extensions.csproj b/src/Extensions.csproj index 7901bcc..667d0a4 100644 --- a/src/Extensions.csproj +++ b/src/Extensions.csproj @@ -13,7 +13,10 @@ - + + + + - \ No newline at end of file + diff --git a/src/Extensions/AindBehaviorDynamicForaging.Generated.cs b/src/Extensions/AindBehaviorDynamicForaging.Generated.cs index 7d04f4e..fcd83c6 100644 --- a/src/Extensions/AindBehaviorDynamicForaging.Generated.cs +++ b/src/Extensions/AindBehaviorDynamicForaging.Generated.cs @@ -43,19 +43,19 @@ public partial class AindDynamicForagingRig private HarpEnvironmentSensor _harpEnvironmentSensor; - private AindManipulator _manipulator; + private AllenNeuralDynamics.AindManipulator.AindManipulator _manipulator; private RigCalibration _calibration; public AindDynamicForagingRig() { - _aindBehaviorServicesPkgVersion = "0.13.2"; + _aindBehaviorServicesPkgVersion = "0.13.5"; _version = "0.0.2-rc23"; _triggeredCameraController = new CameraControllerSpinnakerCamera(); _harpBehavior = new HarpBehavior(); _harpClockGenerator = new HarpWhiteRabbit(); _harpSoundCard = new DynamicForagingSoundCard(); - _manipulator = new AindManipulator(); + _manipulator = new AllenNeuralDynamics.AindManipulator.AindManipulator(); _calibration = new RigCalibration(); } @@ -324,7 +324,7 @@ public HarpEnvironmentSensor HarpEnvironmentSensor [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("manipulator", Required=Newtonsoft.Json.Required.Always)] [System.ComponentModel.DescriptionAttribute("Manipulator")] - public AindManipulator Manipulator + public AllenNeuralDynamics.AindManipulator.AindManipulator Manipulator { get { @@ -590,7 +590,7 @@ public partial class AindDynamicForagingTaskParameters public AindDynamicForagingTaskParameters() { - _aindBehaviorServicesPkgVersion = "0.13.2"; + _aindBehaviorServicesPkgVersion = "0.13.5"; _rewardSize = new RewardSize(); _trialGenerator = new TrialGeneratorSpec(); } @@ -704,137 +704,98 @@ public override string ToString() /// - /// AindManipulator device definition + /// Represents an auditory secondary reinforcer. /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("AindManipulator device definition")] + [System.ComponentModel.DescriptionAttribute("Represents an auditory secondary reinforcer.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class AindManipulator + public partial class AuditorySecondaryReinforcer { - private string _deviceType; - - private AindManipulatorCalibration _calibration; - - private int _whoAmI; - - private string _serialNumber; - - private string _portName; + private string _type; - public AindManipulator() + public AuditorySecondaryReinforcer() { - _deviceType = "StepperDriver"; - _calibration = new AindManipulatorCalibration(); - _whoAmI = 1130; + _type = "Auditory"; } - protected AindManipulator(AindManipulator other) + protected AuditorySecondaryReinforcer(AuditorySecondaryReinforcer other) { - _deviceType = other._deviceType; - _calibration = other._calibration; - _whoAmI = other._whoAmI; - _serialNumber = other._serialNumber; - _portName = other._portName; + _type = other._type; } - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType + [Newtonsoft.Json.JsonPropertyAttribute("type")] + public string Type { get { - return _deviceType; + return _type; } set { - _deviceType = value; + _type = value; } } - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public AindManipulatorCalibration Calibration + public System.IObservable Generate() { - get - { - return _calibration; - } - set - { - _calibration = value; - } + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new AuditorySecondaryReinforcer(this))); } - [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] - public int WhoAmI + public System.IObservable Generate(System.IObservable source) { - get - { - return _whoAmI; - } - set - { - _whoAmI = value; - } + return System.Reactive.Linq.Observable.Select(source, _ => new AuditorySecondaryReinforcer(this)); } - /// - /// Device serial number - /// - [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] - [System.ComponentModel.DescriptionAttribute("Device serial number")] - public string SerialNumber + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - get - { - return _serialNumber; - } - set - { - _serialNumber = value; - } + stringBuilder.Append("Type = " + _type); + return true; } - /// - /// Device port name - /// - [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Device port name")] - public string PortName + public override string ToString() { - get - { - return _portName; - } - set + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) { - _portName = value; + stringBuilder.Append(" "); } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } + } + + + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] + [Bonsai.CombinatorAttribute(MethodName="Generate")] + public partial class BaseModel + { + + public BaseModel() + { + } + + protected BaseModel(BaseModel other) + { } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new AindManipulator(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BaseModel(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new AindManipulator(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new BaseModel(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName); - return true; + return false; } public override string ToString() @@ -853,129 +814,104 @@ public override string ToString() /// - /// AindManipulator calibration class + /// Parameters controlling when behavior is considered stable enough to switch blocks. /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("AindManipulator calibration class")] + [System.ComponentModel.DescriptionAttribute("Parameters controlling when behavior is considered stable enough to switch blocks" + + ".")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class AindManipulatorCalibration + public partial class BehaviorStabilityParameters { - private string _description; - - private ManipulatorPosition _fullStepToMm; - - private System.Collections.Generic.List _axisConfiguration; - - private System.Collections.Generic.List _homingOrder; - - private ManipulatorPosition _initialPosition; + private BehaviorStabilityParametersBehaviorEvaluationMode _behaviorEvaluationMode; - public AindManipulatorCalibration() - { - _description = "AindManipulator calibration and settings"; - _fullStepToMm = new ManipulatorPosition(); - _axisConfiguration = new System.Collections.Generic.List(); - _homingOrder = new System.Collections.Generic.List(); - _initialPosition = new ManipulatorPosition(); - } + private double _behaviorStabilityFraction; - protected AindManipulatorCalibration(AindManipulatorCalibration other) - { - _description = other._description; - _fullStepToMm = other._fullStepToMm; - _axisConfiguration = other._axisConfiguration; - _homingOrder = other._homingOrder; - _initialPosition = other._initialPosition; - } + private int _minConsecutiveStableTrials; - [Newtonsoft.Json.JsonPropertyAttribute("description")] - public string Description + public BehaviorStabilityParameters() { - get - { - return _description; - } - set - { - _description = value; - } + _behaviorEvaluationMode = BehaviorStabilityParametersBehaviorEvaluationMode.End; + _behaviorStabilityFraction = 0.5D; + _minConsecutiveStableTrials = 5; } - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("full_step_to_mm")] - public ManipulatorPosition FullStepToMm + protected BehaviorStabilityParameters(BehaviorStabilityParameters other) { - get - { - return _fullStepToMm; - } - set - { - _fullStepToMm = value; - } + _behaviorEvaluationMode = other._behaviorEvaluationMode; + _behaviorStabilityFraction = other._behaviorStabilityFraction; + _minConsecutiveStableTrials = other._minConsecutiveStableTrials; } - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("axis_configuration")] - public System.Collections.Generic.List AxisConfiguration + /// + /// When to evaluate stability — at the end of the block (end) or at any point during the block (anytime). + /// + [Newtonsoft.Json.JsonPropertyAttribute("behavior_evaluation_mode")] + [System.ComponentModel.DescriptionAttribute("When to evaluate stability — at the end of the block (end) or at any point during" + + " the block (anytime).")] + public BehaviorStabilityParametersBehaviorEvaluationMode BehaviorEvaluationMode { get { - return _axisConfiguration; + return _behaviorEvaluationMode; } set { - _axisConfiguration = value; + _behaviorEvaluationMode = value; } } - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("homing_order")] - public System.Collections.Generic.List HomingOrder + /// + /// Fraction scaling reward-probability difference for behavior. + /// + [Newtonsoft.Json.JsonPropertyAttribute("behavior_stability_fraction")] + [System.ComponentModel.DescriptionAttribute("Fraction scaling reward-probability difference for behavior.")] + public double BehaviorStabilityFraction { get { - return _homingOrder; + return _behaviorStabilityFraction; } set { - _homingOrder = value; + _behaviorStabilityFraction = value; } } - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("initial_position")] - public ManipulatorPosition InitialPosition + /// + /// Minimum number of consecutive trials satisfying the behavioral stability fraction. + /// + [Newtonsoft.Json.JsonPropertyAttribute("min_consecutive_stable_trials")] + [System.ComponentModel.DescriptionAttribute("Minimum number of consecutive trials satisfying the behavioral stability fraction" + + ".")] + public int MinConsecutiveStableTrials { get { - return _initialPosition; + return _minConsecutiveStableTrials; } set { - _initialPosition = value; + _minConsecutiveStableTrials = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new AindManipulatorCalibration(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BehaviorStabilityParameters(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new AindManipulatorCalibration(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new BehaviorStabilityParameters(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Description = " + _description + ", "); - stringBuilder.Append("FullStepToMm = " + _fullStepToMm + ", "); - stringBuilder.Append("AxisConfiguration = " + _axisConfiguration + ", "); - stringBuilder.Append("HomingOrder = " + _homingOrder + ", "); - stringBuilder.Append("InitialPosition = " + _initialPosition); + stringBuilder.Append("BehaviorEvaluationMode = " + _behaviorEvaluationMode + ", "); + stringBuilder.Append("BehaviorStabilityFraction = " + _behaviorStabilityFraction + ", "); + stringBuilder.Append("MinConsecutiveStableTrials = " + _minConsecutiveStableTrials); return true; } @@ -994,54 +930,117 @@ public override string ToString() } - /// - /// Represents an auditory secondary reinforcer. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Represents an auditory secondary reinforcer.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class AuditorySecondaryReinforcer + public partial class CameraControllerSpinnakerCamera { - private string _type; + private string _deviceType; - public AuditorySecondaryReinforcer() + private BaseModel _calibration; + + private System.Collections.Generic.Dictionary _cameras; + + private int? _frameRate; + + public CameraControllerSpinnakerCamera() { - _type = "Auditory"; + _deviceType = "CameraController"; + _cameras = new System.Collections.Generic.Dictionary(); + _frameRate = 30; } - protected AuditorySecondaryReinforcer(AuditorySecondaryReinforcer other) + protected CameraControllerSpinnakerCamera(CameraControllerSpinnakerCamera other) { - _type = other._type; + _deviceType = other._deviceType; + _calibration = other._calibration; + _cameras = other._cameras; + _frameRate = other._frameRate; } - [Newtonsoft.Json.JsonPropertyAttribute("type")] - public string Type + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _type; + return _deviceType; } set { - _type = value; + _deviceType = value; } } - public System.IObservable Generate() + /// + /// Calibration for the device. + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new AuditorySecondaryReinforcer(this))); + get + { + return _calibration; + } + set + { + _calibration = value; + } } - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new AuditorySecondaryReinforcer(this)); - } + /// + /// Cameras to be instantiated + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("cameras", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Cameras to be instantiated")] + public System.Collections.Generic.Dictionary Cameras + { + get + { + return _cameras; + } + set + { + _cameras = value; + } + } + + /// + /// Frame rate of the trigger to all cameras + /// + [Newtonsoft.Json.JsonPropertyAttribute("frame_rate")] + [System.ComponentModel.DescriptionAttribute("Frame rate of the trigger to all cameras")] + public int? FrameRate + { + get + { + return _frameRate; + } + set + { + _frameRate = value; + } + } + + public System.IObservable Generate() + { + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CameraControllerSpinnakerCamera(this))); + } + + public System.IObservable Generate(System.IObservable source) + { + return System.Reactive.Linq.Observable.Select(source, _ => new CameraControllerSpinnakerCamera(this)); + } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Type = " + _type); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("Cameras = " + _cameras + ", "); + stringBuilder.Append("FrameRate = " + _frameRate); return true; } @@ -1060,211 +1059,117 @@ public override string ToString() } - /// - /// Motor axis available - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - public enum Axis - { - - [System.Runtime.Serialization.EnumMemberAttribute(Value="0")] - None = 0, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="1")] - X = 1, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="2")] - Y1 = 2, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="3")] - Y2 = 3, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="4")] - Z = 4, - } - - - /// - /// Axis configuration - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Axis configuration")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class AxisConfiguration + public partial class CameraControllerWebCamera { - private Axis _axis; - - private int _stepAccelerationInterval; - - private int _stepInterval; - - private MicrostepResolution _microstepResolution; - - private int _maximumStepInterval; + private string _deviceType; - private MotorOperationMode _motorOperationMode; + private BaseModel _calibration; - private double _maxLimit; + private System.Collections.Generic.Dictionary _cameras; - private double _minLimit; + private int? _frameRate; - public AxisConfiguration() + public CameraControllerWebCamera() { - _stepAccelerationInterval = 100; - _stepInterval = 100; - _microstepResolution = MicrostepResolution.Microstep8; - _maximumStepInterval = 2000; - _motorOperationMode = MotorOperationMode.Quiet; - _maxLimit = 25D; - _minLimit = -0.01D; + _deviceType = "CameraController"; + _cameras = new System.Collections.Generic.Dictionary(); + _frameRate = 30; } - protected AxisConfiguration(AxisConfiguration other) + protected CameraControllerWebCamera(CameraControllerWebCamera other) { - _axis = other._axis; - _stepAccelerationInterval = other._stepAccelerationInterval; - _stepInterval = other._stepInterval; - _microstepResolution = other._microstepResolution; - _maximumStepInterval = other._maximumStepInterval; - _motorOperationMode = other._motorOperationMode; - _maxLimit = other._maxLimit; - _minLimit = other._minLimit; + _deviceType = other._deviceType; + _calibration = other._calibration; + _cameras = other._cameras; + _frameRate = other._frameRate; } - [Newtonsoft.Json.JsonPropertyAttribute("axis", Required=Newtonsoft.Json.Required.Always)] - public Axis Axis + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _axis; + return _deviceType; } set { - _axis = value; + _deviceType = value; } } /// - /// Acceleration of the step interval in microseconds + /// Calibration for the device. /// - [Newtonsoft.Json.JsonPropertyAttribute("step_acceleration_interval")] - [System.ComponentModel.DescriptionAttribute("Acceleration of the step interval in microseconds")] - public int StepAccelerationInterval + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration { get { - return _stepAccelerationInterval; + return _calibration; } set { - _stepAccelerationInterval = value; + _calibration = value; } } /// - /// Step interval in microseconds. + /// Cameras to be instantiated /// - [Newtonsoft.Json.JsonPropertyAttribute("step_interval")] - [System.ComponentModel.DescriptionAttribute("Step interval in microseconds.")] - public int StepInterval - { - get - { - return _stepInterval; - } - set - { - _stepInterval = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("microstep_resolution")] - public MicrostepResolution MicrostepResolution - { - get - { - return _microstepResolution; - } - set - { - _microstepResolution = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("maximum_step_interval")] - public int MaximumStepInterval - { - get - { - return _maximumStepInterval; - } - set - { - _maximumStepInterval = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("motor_operation_mode")] - public MotorOperationMode MotorOperationMode - { - get - { - return _motorOperationMode; - } - set - { - _motorOperationMode = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("max_limit")] - public double MaxLimit + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("cameras", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Cameras to be instantiated")] + public System.Collections.Generic.Dictionary Cameras { get { - return _maxLimit; + return _cameras; } set { - _maxLimit = value; + _cameras = value; } } - [Newtonsoft.Json.JsonPropertyAttribute("min_limit")] - public double MinLimit + /// + /// Frame rate of the trigger to all cameras + /// + [Newtonsoft.Json.JsonPropertyAttribute("frame_rate")] + [System.ComponentModel.DescriptionAttribute("Frame rate of the trigger to all cameras")] + public int? FrameRate { get { - return _minLimit; + return _frameRate; } set { - _minLimit = value; + _frameRate = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new AxisConfiguration(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CameraControllerWebCamera(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new AxisConfiguration(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new CameraControllerWebCamera(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Axis = " + _axis + ", "); - stringBuilder.Append("StepAccelerationInterval = " + _stepAccelerationInterval + ", "); - stringBuilder.Append("StepInterval = " + _stepInterval + ", "); - stringBuilder.Append("MicrostepResolution = " + _microstepResolution + ", "); - stringBuilder.Append("MaximumStepInterval = " + _maximumStepInterval + ", "); - stringBuilder.Append("MotorOperationMode = " + _motorOperationMode + ", "); - stringBuilder.Append("MaxLimit = " + _maxLimit + ", "); - stringBuilder.Append("MinLimit = " + _minLimit); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("Cameras = " + _cameras + ", "); + stringBuilder.Append("FrameRate = " + _frameRate); return true; } @@ -1286,30 +1191,72 @@ public override string ToString() [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BaseModel + public partial class ConnectedClockOutput { - public BaseModel() + private string _targetDevice; + + private int _outputChannel; + + public ConnectedClockOutput() { } - protected BaseModel(BaseModel other) + protected ConnectedClockOutput(ConnectedClockOutput other) { + _targetDevice = other._targetDevice; + _outputChannel = other._outputChannel; } - public System.IObservable Generate() + /// + /// Optional device name to provide user additional information + /// + [Newtonsoft.Json.JsonPropertyAttribute("target_device")] + [System.ComponentModel.DescriptionAttribute("Optional device name to provide user additional information")] + public string TargetDevice { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BaseModel(this))); + get + { + return _targetDevice; + } + set + { + _targetDevice = value; + } } - public System.IObservable Generate(System.IObservable source) + /// + /// Output channel + /// + [Newtonsoft.Json.JsonPropertyAttribute("output_channel", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Output channel")] + public int OutputChannel { - return System.Reactive.Linq.Observable.Select(source, _ => new BaseModel(this)); + get + { + return _outputChannel; + } + set + { + _outputChannel = value; + } + } + + public System.IObservable Generate() + { + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ConnectedClockOutput(this))); + } + + public System.IObservable Generate(System.IObservable source) + { + return System.Reactive.Linq.Observable.Select(source, _ => new ConnectedClockOutput(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - return false; + stringBuilder.Append("TargetDevice = " + _targetDevice + ", "); + stringBuilder.Append("OutputChannel = " + _outputChannel); + return true; } public override string ToString() @@ -1328,104 +1275,146 @@ public override string ToString() /// - /// Parameters controlling when behavior is considered stable enough to switch blocks. + /// Defines the conditions under which a foraging session should terminate. /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters controlling when behavior is considered stable enough to switch blocks" + - ".")] + [System.ComponentModel.DescriptionAttribute("Defines the conditions under which a foraging session should terminate.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BehaviorStabilityParameters + public partial class CoupledTrialGenerationEndConditions { - private BehaviorStabilityParametersBehaviorEvaluationMode _behaviorEvaluationMode; + private int _ignoreWin; - private double _behaviorStabilityFraction; + private double _ignoreRatioThreshold; - private int _minConsecutiveStableTrials; + private int _maxTrial; - public BehaviorStabilityParameters() + private double _maxTime; + + private double _minTime; + + public CoupledTrialGenerationEndConditions() { - _behaviorEvaluationMode = BehaviorStabilityParametersBehaviorEvaluationMode.End; - _behaviorStabilityFraction = 0.5D; - _minConsecutiveStableTrials = 5; + _ignoreWin = 30; + _ignoreRatioThreshold = 0.8D; + _maxTrial = 1000; + _maxTime = 4500D; + _minTime = 1800D; } - protected BehaviorStabilityParameters(BehaviorStabilityParameters other) + protected CoupledTrialGenerationEndConditions(CoupledTrialGenerationEndConditions other) { - _behaviorEvaluationMode = other._behaviorEvaluationMode; - _behaviorStabilityFraction = other._behaviorStabilityFraction; - _minConsecutiveStableTrials = other._minConsecutiveStableTrials; + _ignoreWin = other._ignoreWin; + _ignoreRatioThreshold = other._ignoreRatioThreshold; + _maxTrial = other._maxTrial; + _maxTime = other._maxTime; + _minTime = other._minTime; } /// - /// When to evaluate stability — at the end of the block (end) or at any point during the block (anytime). + /// Number of recent trials to check for ignored responses. /// - [Newtonsoft.Json.JsonPropertyAttribute("behavior_evaluation_mode")] - [System.ComponentModel.DescriptionAttribute("When to evaluate stability — at the end of the block (end) or at any point during" + - " the block (anytime).")] - public BehaviorStabilityParametersBehaviorEvaluationMode BehaviorEvaluationMode + [Newtonsoft.Json.JsonPropertyAttribute("ignore_win")] + [System.ComponentModel.DescriptionAttribute("Number of recent trials to check for ignored responses.")] + public int IgnoreWin { get { - return _behaviorEvaluationMode; + return _ignoreWin; } set { - _behaviorEvaluationMode = value; + _ignoreWin = value; } } /// - /// Fraction scaling reward-probability difference for behavior. + /// Maximum fraction of ignored trials within the window before the session is ended. /// - [Newtonsoft.Json.JsonPropertyAttribute("behavior_stability_fraction")] - [System.ComponentModel.DescriptionAttribute("Fraction scaling reward-probability difference for behavior.")] - public double BehaviorStabilityFraction + [Newtonsoft.Json.JsonPropertyAttribute("ignore_ratio_threshold")] + [System.ComponentModel.DescriptionAttribute("Maximum fraction of ignored trials within the window before the session is ended." + + "")] + public double IgnoreRatioThreshold { get { - return _behaviorStabilityFraction; + return _ignoreRatioThreshold; } set { - _behaviorStabilityFraction = value; + _ignoreRatioThreshold = value; } } /// - /// Minimum number of consecutive trials satisfying the behavioral stability fraction. + /// Maximum number of trials allowed in a session. /// - [Newtonsoft.Json.JsonPropertyAttribute("min_consecutive_stable_trials")] - [System.ComponentModel.DescriptionAttribute("Minimum number of consecutive trials satisfying the behavioral stability fraction" + - ".")] - public int MinConsecutiveStableTrials + [Newtonsoft.Json.JsonPropertyAttribute("max_trial")] + [System.ComponentModel.DescriptionAttribute("Maximum number of trials allowed in a session.")] + public int MaxTrial { get { - return _minConsecutiveStableTrials; + return _maxTrial; } set { - _minConsecutiveStableTrials = value; + _maxTrial = value; } } - public System.IObservable Generate() + /// + /// Maximum session duration (sec). + /// + [Newtonsoft.Json.JsonPropertyAttribute("max_time")] + [System.ComponentModel.DescriptionAttribute("Maximum session duration (sec).")] + public double MaxTime { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BehaviorStabilityParameters(this))); + get + { + return _maxTime; + } + set + { + _maxTime = value; + } } - public System.IObservable Generate(System.IObservable source) + /// + /// Minimum session duration (sec) + /// + [Newtonsoft.Json.JsonPropertyAttribute("min_time")] + [System.ComponentModel.DescriptionAttribute("Minimum session duration (sec)")] + public double MinTime { - return System.Reactive.Linq.Observable.Select(source, _ => new BehaviorStabilityParameters(this)); + get + { + return _minTime; + } + set + { + _minTime = value; + } + } + + public System.IObservable Generate() + { + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CoupledTrialGenerationEndConditions(this))); + } + + public System.IObservable Generate(System.IObservable source) + { + return System.Reactive.Linq.Observable.Select(source, _ => new CoupledTrialGenerationEndConditions(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("BehaviorEvaluationMode = " + _behaviorEvaluationMode + ", "); - stringBuilder.Append("BehaviorStabilityFraction = " + _behaviorStabilityFraction + ", "); - stringBuilder.Append("MinConsecutiveStableTrials = " + _minConsecutiveStableTrials); + stringBuilder.Append("IgnoreWin = " + _ignoreWin + ", "); + stringBuilder.Append("IgnoreRatioThreshold = " + _ignoreRatioThreshold + ", "); + stringBuilder.Append("MaxTrial = " + _maxTrial + ", "); + stringBuilder.Append("MaxTime = " + _maxTime + ", "); + stringBuilder.Append("MinTime = " + _minTime); return true; } @@ -1444,324 +1433,286 @@ public override string ToString() } - /// - /// A beta probability distribution. - /// - ///Continuous distribution bounded between 0 and 1. Commonly used - ///for modeling probabilities and proportions. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A beta probability distribution.\n\nContinuous distribution bounded between 0 and 1" + - ". Commonly used\nfor modeling probabilities and proportions.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BetaDistribution : Distribution + public partial class CoupledTrialGeneratorSpec : TrialGeneratorSpec { - private BetaDistributionParameters _distributionParameters; + private Distribution _quiescentDuration; + + private double _responseDuration; + + private double _rewardConsumptionDuration; + + private Distribution _interTrialIntervalDuration; + + private Distribution _blockLen; + + private int _minBlockReward; + + private int _kernelSize; + + private RewardProbabilityParameters _rewardProbabilityParameters; + + private bool _isBaiting; + + private CoupledTrialGenerationEndConditions _trialGenerationEndParameters; - private TruncationParameters _truncationParameters; + private BehaviorStabilityParameters _behaviorStabilityParameters; - private ScalingParameters _scalingParameters; + private bool _extendBlockOnNoResponse; - public BetaDistribution() + public CoupledTrialGeneratorSpec() { - _distributionParameters = new BetaDistributionParameters(); + _quiescentDuration = new Distribution(); + _responseDuration = 1D; + _rewardConsumptionDuration = 3D; + _interTrialIntervalDuration = new Distribution(); + _blockLen = new Distribution(); + _minBlockReward = 1; + _kernelSize = 2; + _rewardProbabilityParameters = new RewardProbabilityParameters(); + _isBaiting = false; + _trialGenerationEndParameters = new CoupledTrialGenerationEndConditions(); + _behaviorStabilityParameters = new BehaviorStabilityParameters(); + _extendBlockOnNoResponse = true; } - protected BetaDistribution(BetaDistribution other) : + protected CoupledTrialGeneratorSpec(CoupledTrialGeneratorSpec other) : base(other) { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; + _quiescentDuration = other._quiescentDuration; + _responseDuration = other._responseDuration; + _rewardConsumptionDuration = other._rewardConsumptionDuration; + _interTrialIntervalDuration = other._interTrialIntervalDuration; + _blockLen = other._blockLen; + _minBlockReward = other._minBlockReward; + _kernelSize = other._kernelSize; + _rewardProbabilityParameters = other._rewardProbabilityParameters; + _isBaiting = other._isBaiting; + _trialGenerationEndParameters = other._trialGenerationEndParameters; + _behaviorStabilityParameters = other._behaviorStabilityParameters; + _extendBlockOnNoResponse = other._extendBlockOnNoResponse; } /// - /// Parameters of the distribution + /// Distribution describing the quiescence period before trial starts (in seconds). Each lick resets the timer. /// [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public BetaDistributionParameters DistributionParameters + [Newtonsoft.Json.JsonPropertyAttribute("quiescent_duration")] + [System.ComponentModel.DescriptionAttribute("Distribution describing the quiescence period before trial starts (in seconds). E" + + "ach lick resets the timer.")] + public Distribution QuiescentDuration { get { - return _distributionParameters; + return _quiescentDuration; } set { - _distributionParameters = value; + _quiescentDuration = value; } } /// - /// Truncation parameters of the distribution + /// Duration after go cue for animal response. /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters + [Newtonsoft.Json.JsonPropertyAttribute("response_duration")] + [System.ComponentModel.DescriptionAttribute("Duration after go cue for animal response.")] + public double ResponseDuration { get { - return _truncationParameters; + return _responseDuration; } set { - _truncationParameters = value; + _responseDuration = value; } } /// - /// Scaling parameters of the distribution + /// Duration of reward consumption before transition to ITI (in seconds). /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters + [Newtonsoft.Json.JsonPropertyAttribute("reward_consumption_duration")] + [System.ComponentModel.DescriptionAttribute("Duration of reward consumption before transition to ITI (in seconds).")] + public double RewardConsumptionDuration { get { - return _scalingParameters; + return _rewardConsumptionDuration; } set { - _scalingParameters = value; + _rewardConsumptionDuration = value; } } - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BetaDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new BetaDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + /// + /// Distribution describing the inter-trial interval (in seconds). + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("inter_trial_interval_duration")] + [System.ComponentModel.DescriptionAttribute("Distribution describing the inter-trial interval (in seconds).")] + public Distribution InterTrialIntervalDuration { - if (base.PrintMembers(stringBuilder)) + get { - stringBuilder.Append(", "); + return _interTrialIntervalDuration; + } + set + { + _interTrialIntervalDuration = value; } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a beta distribution. - /// - ///Defined by alpha and beta shape parameters. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a beta distribution.\n\nDefined by alpha and beta shape parameters.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BetaDistributionParameters - { - - private string _family; - - private double _alpha; - - private double _beta; - - public BetaDistributionParameters() - { - _family = "Beta"; - _alpha = 5D; - _beta = 5D; } - protected BetaDistributionParameters(BetaDistributionParameters other) + /// + /// Distribution describing block length. + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("block_len")] + [System.ComponentModel.DescriptionAttribute("Distribution describing block length.")] + public Distribution BlockLen { - _family = other._family; - _alpha = other._alpha; - _beta = other._beta; + get + { + return _blockLen; + } + set + { + _blockLen = value; + } } - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family + [Newtonsoft.Json.JsonPropertyAttribute("min_block_reward")] + public int MinBlockReward { get { - return _family; + return _minBlockReward; } set { - _family = value; + _minBlockReward = value; } } /// - /// Alpha parameter of the distribution + /// Kernel to evaluate choice fraction. /// - [Newtonsoft.Json.JsonPropertyAttribute("alpha")] - [System.ComponentModel.DescriptionAttribute("Alpha parameter of the distribution")] - public double Alpha + [Newtonsoft.Json.JsonPropertyAttribute("kernel_size")] + [System.ComponentModel.DescriptionAttribute("Kernel to evaluate choice fraction.")] + public int KernelSize { get { - return _alpha; + return _kernelSize; } set { - _alpha = value; + _kernelSize = value; } } /// - /// Beta parameter of the distribution + /// Parameters defining the reward probability structure. /// - [Newtonsoft.Json.JsonPropertyAttribute("beta")] - [System.ComponentModel.DescriptionAttribute("Beta parameter of the distribution")] - public double Beta + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("reward_probability_parameters")] + [System.ComponentModel.DescriptionAttribute("Parameters defining the reward probability structure.")] + public RewardProbabilityParameters RewardProbabilityParameters { get { - return _beta; + return _rewardProbabilityParameters; } set { - _beta = value; + _rewardProbabilityParameters = value; } } - public System.IObservable Generate() + /// + /// Whether uncollected rewards carry over to the next trial. + /// + [Newtonsoft.Json.JsonPropertyAttribute("is_baiting")] + [System.ComponentModel.DescriptionAttribute("Whether uncollected rewards carry over to the next trial.")] + public bool IsBaiting { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BetaDistributionParameters(this))); + get + { + return _isBaiting; + } + set + { + _isBaiting = value; + } } - public System.IObservable Generate(System.IObservable source) + /// + /// Conditions to end trial generation. + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("trial_generation_end_parameters")] + [System.ComponentModel.DescriptionAttribute("Conditions to end trial generation.")] + public CoupledTrialGenerationEndConditions TrialGenerationEndParameters { - return System.Reactive.Linq.Observable.Select(source, _ => new BetaDistributionParameters(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Alpha = " + _alpha + ", "); - stringBuilder.Append("Beta = " + _beta); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// A binomial probability distribution. - /// - ///Models the number of successes in a fixed number of independent - ///Bernoulli trials with constant success probability. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A binomial probability distribution.\n\nModels the number of successes in a fixed n" + - "umber of independent\nBernoulli trials with constant success probability.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BinomialDistribution : Distribution - { - - private BinomialDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public BinomialDistribution() - { - _distributionParameters = new BinomialDistributionParameters(); - } - - protected BinomialDistribution(BinomialDistribution other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public BinomialDistributionParameters DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } + get + { + return _trialGenerationEndParameters; + } + set + { + _trialGenerationEndParameters = value; + } } /// - /// Truncation parameters of the distribution + /// Parameters controlling behavior-dependent block switching. If None, block switches rely only on length and reward criteria. /// [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters + [Newtonsoft.Json.JsonPropertyAttribute("behavior_stability_parameters")] + [System.ComponentModel.DescriptionAttribute("Parameters controlling behavior-dependent block switching. If None, block switche" + + "s rely only on length and reward criteria.")] + public BehaviorStabilityParameters BehaviorStabilityParameters { get { - return _truncationParameters; + return _behaviorStabilityParameters; } set { - _truncationParameters = value; + _behaviorStabilityParameters = value; } } /// - /// Scaling parameters of the distribution + /// Whether to extend the minimum block length by one trial when the animal does not respond. /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters + [Newtonsoft.Json.JsonPropertyAttribute("extend_block_on_no_response")] + [System.ComponentModel.DescriptionAttribute("Whether to extend the minimum block length by one trial when the animal does not " + + "respond.")] + public bool ExtendBlockOnNoResponse { get { - return _scalingParameters; + return _extendBlockOnNoResponse; } set { - _scalingParameters = value; + _extendBlockOnNoResponse = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BinomialDistribution(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CoupledTrialGeneratorSpec(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new BinomialDistribution(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new CoupledTrialGeneratorSpec(this)); } protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) @@ -1770,1981 +1721,61 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) { stringBuilder.Append(", "); } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a binomial distribution. - /// - ///Defined by number of trials (n) and success probability (p). - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a binomial distribution.\n\nDefined by number of trials (n) and succ" + - "ess probability (p).")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BinomialDistributionParameters - { - - private string _family; - - private int _n; - - private double _p; - - public BinomialDistributionParameters() - { - _family = "Binomial"; - _n = 1; - _p = 0.5D; - } - - protected BinomialDistributionParameters(BinomialDistributionParameters other) - { - _family = other._family; - _n = other._n; - _p = other._p; - } - - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family - { - get - { - return _family; - } - set - { - _family = value; - } - } - - /// - /// Number of trials - /// - [Newtonsoft.Json.JsonPropertyAttribute("n")] - [System.ComponentModel.DescriptionAttribute("Number of trials")] - public int N - { - get - { - return _n; - } - set - { - _n = value; - } - } - - /// - /// Probability of success - /// - [Newtonsoft.Json.JsonPropertyAttribute("p")] - [System.ComponentModel.DescriptionAttribute("Probability of success")] - public double P - { - get - { - return _p; - } - set - { - _p = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BinomialDistributionParameters(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new BinomialDistributionParameters(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("N = " + _n + ", "); - stringBuilder.Append("P = " + _p); + stringBuilder.Append("QuiescentDuration = " + _quiescentDuration + ", "); + stringBuilder.Append("ResponseDuration = " + _responseDuration + ", "); + stringBuilder.Append("RewardConsumptionDuration = " + _rewardConsumptionDuration + ", "); + stringBuilder.Append("InterTrialIntervalDuration = " + _interTrialIntervalDuration + ", "); + stringBuilder.Append("BlockLen = " + _blockLen + ", "); + stringBuilder.Append("MinBlockReward = " + _minBlockReward + ", "); + stringBuilder.Append("KernelSize = " + _kernelSize + ", "); + stringBuilder.Append("RewardProbabilityParameters = " + _rewardProbabilityParameters + ", "); + stringBuilder.Append("IsBaiting = " + _isBaiting + ", "); + stringBuilder.Append("TrialGenerationEndParameters = " + _trialGenerationEndParameters + ", "); + stringBuilder.Append("BehaviorStabilityParameters = " + _behaviorStabilityParameters + ", "); + stringBuilder.Append("ExtendBlockOnNoResponse = " + _extendBlockOnNoResponse); return true; } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } } [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "family")] + [JsonInheritanceAttribute("Scalar", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.Scalar))] + [JsonInheritanceAttribute("Beta", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.BetaDistribution))] + [JsonInheritanceAttribute("Binomial", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.BinomialDistribution))] + [JsonInheritanceAttribute("Exponential", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.ExponentialDistribution))] + [JsonInheritanceAttribute("Normal", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.NormalDistribution))] + [JsonInheritanceAttribute("LogNormal", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.LogNormalDistribution))] + [JsonInheritanceAttribute("Uniform", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.UniformDistribution))] + [JsonInheritanceAttribute("Poisson", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.PoissonDistribution))] + [JsonInheritanceAttribute("Gamma", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.GammaDistribution))] + [JsonInheritanceAttribute("Pdf", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.PdfDistribution))] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class CameraControllerSpinnakerCamera + public partial class Distribution { - private string _deviceType; - - private BaseModel _calibration; - - private System.Collections.Generic.Dictionary _cameras; - - private int? _frameRate; - - public CameraControllerSpinnakerCamera() - { - _deviceType = "CameraController"; - _cameras = new System.Collections.Generic.Dictionary(); - _frameRate = 30; - } - - protected CameraControllerSpinnakerCamera(CameraControllerSpinnakerCamera other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _cameras = other._cameras; - _frameRate = other._frameRate; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - /// - /// Cameras to be instantiated - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("cameras", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Cameras to be instantiated")] - public System.Collections.Generic.Dictionary Cameras + public Distribution() { - get - { - return _cameras; - } - set - { - _cameras = value; - } } - /// - /// Frame rate of the trigger to all cameras - /// - [Newtonsoft.Json.JsonPropertyAttribute("frame_rate")] - [System.ComponentModel.DescriptionAttribute("Frame rate of the trigger to all cameras")] - public int? FrameRate + protected Distribution(Distribution other) { - get - { - return _frameRate; - } - set - { - _frameRate = value; - } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CameraControllerSpinnakerCamera(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Distribution(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new CameraControllerSpinnakerCamera(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new Distribution(this)); } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("Cameras = " + _cameras + ", "); - stringBuilder.Append("FrameRate = " + _frameRate); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class CameraControllerWebCamera - { - - private string _deviceType; - - private BaseModel _calibration; - - private System.Collections.Generic.Dictionary _cameras; - - private int? _frameRate; - - public CameraControllerWebCamera() - { - _deviceType = "CameraController"; - _cameras = new System.Collections.Generic.Dictionary(); - _frameRate = 30; - } - - protected CameraControllerWebCamera(CameraControllerWebCamera other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _cameras = other._cameras; - _frameRate = other._frameRate; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - /// - /// Cameras to be instantiated - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("cameras", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Cameras to be instantiated")] - public System.Collections.Generic.Dictionary Cameras - { - get - { - return _cameras; - } - set - { - _cameras = value; - } - } - - /// - /// Frame rate of the trigger to all cameras - /// - [Newtonsoft.Json.JsonPropertyAttribute("frame_rate")] - [System.ComponentModel.DescriptionAttribute("Frame rate of the trigger to all cameras")] - public int? FrameRate - { - get - { - return _frameRate; - } - set - { - _frameRate = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CameraControllerWebCamera(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new CameraControllerWebCamera(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("Cameras = " + _cameras + ", "); - stringBuilder.Append("FrameRate = " + _frameRate); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ConnectedClockOutput - { - - private string _targetDevice; - - private int _outputChannel; - - public ConnectedClockOutput() - { - } - - protected ConnectedClockOutput(ConnectedClockOutput other) - { - _targetDevice = other._targetDevice; - _outputChannel = other._outputChannel; - } - - /// - /// Optional device name to provide user additional information - /// - [Newtonsoft.Json.JsonPropertyAttribute("target_device")] - [System.ComponentModel.DescriptionAttribute("Optional device name to provide user additional information")] - public string TargetDevice - { - get - { - return _targetDevice; - } - set - { - _targetDevice = value; - } - } - - /// - /// Output channel - /// - [Newtonsoft.Json.JsonPropertyAttribute("output_channel", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Output channel")] - public int OutputChannel - { - get - { - return _outputChannel; - } - set - { - _outputChannel = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ConnectedClockOutput(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new ConnectedClockOutput(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("TargetDevice = " + _targetDevice + ", "); - stringBuilder.Append("OutputChannel = " + _outputChannel); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// Defines the conditions under which a foraging session should terminate. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Defines the conditions under which a foraging session should terminate.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class CoupledTrialGenerationEndConditions - { - - private int _ignoreWin; - - private double _ignoreRatioThreshold; - - private int _maxTrial; - - private double _maxTime; - - private double _minTime; - - public CoupledTrialGenerationEndConditions() - { - _ignoreWin = 30; - _ignoreRatioThreshold = 0.8D; - _maxTrial = 1000; - _maxTime = 4500D; - _minTime = 1800D; - } - - protected CoupledTrialGenerationEndConditions(CoupledTrialGenerationEndConditions other) - { - _ignoreWin = other._ignoreWin; - _ignoreRatioThreshold = other._ignoreRatioThreshold; - _maxTrial = other._maxTrial; - _maxTime = other._maxTime; - _minTime = other._minTime; - } - - /// - /// Number of recent trials to check for ignored responses. - /// - [Newtonsoft.Json.JsonPropertyAttribute("ignore_win")] - [System.ComponentModel.DescriptionAttribute("Number of recent trials to check for ignored responses.")] - public int IgnoreWin - { - get - { - return _ignoreWin; - } - set - { - _ignoreWin = value; - } - } - - /// - /// Maximum fraction of ignored trials within the window before the session is ended. - /// - [Newtonsoft.Json.JsonPropertyAttribute("ignore_ratio_threshold")] - [System.ComponentModel.DescriptionAttribute("Maximum fraction of ignored trials within the window before the session is ended." + - "")] - public double IgnoreRatioThreshold - { - get - { - return _ignoreRatioThreshold; - } - set - { - _ignoreRatioThreshold = value; - } - } - - /// - /// Maximum number of trials allowed in a session. - /// - [Newtonsoft.Json.JsonPropertyAttribute("max_trial")] - [System.ComponentModel.DescriptionAttribute("Maximum number of trials allowed in a session.")] - public int MaxTrial - { - get - { - return _maxTrial; - } - set - { - _maxTrial = value; - } - } - - /// - /// Maximum session duration (sec). - /// - [Newtonsoft.Json.JsonPropertyAttribute("max_time")] - [System.ComponentModel.DescriptionAttribute("Maximum session duration (sec).")] - public double MaxTime - { - get - { - return _maxTime; - } - set - { - _maxTime = value; - } - } - - /// - /// Minimum session duration (sec) - /// - [Newtonsoft.Json.JsonPropertyAttribute("min_time")] - [System.ComponentModel.DescriptionAttribute("Minimum session duration (sec)")] - public double MinTime - { - get - { - return _minTime; - } - set - { - _minTime = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CoupledTrialGenerationEndConditions(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new CoupledTrialGenerationEndConditions(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("IgnoreWin = " + _ignoreWin + ", "); - stringBuilder.Append("IgnoreRatioThreshold = " + _ignoreRatioThreshold + ", "); - stringBuilder.Append("MaxTrial = " + _maxTrial + ", "); - stringBuilder.Append("MaxTime = " + _maxTime + ", "); - stringBuilder.Append("MinTime = " + _minTime); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class CoupledTrialGeneratorSpec : TrialGeneratorSpec - { - - private Distribution _quiescentDuration; - - private double _responseDuration; - - private double _rewardConsumptionDuration; - - private Distribution _interTrialIntervalDuration; - - private Distribution _blockLen; - - private int _minBlockReward; - - private int _kernelSize; - - private RewardProbabilityParameters _rewardProbabilityParameters; - - private bool _isBaiting; - - private CoupledTrialGenerationEndConditions _trialGenerationEndParameters; - - private BehaviorStabilityParameters _behaviorStabilityParameters; - - private bool _extendBlockOnNoResponse; - - public CoupledTrialGeneratorSpec() - { - _quiescentDuration = new Distribution(); - _responseDuration = 1D; - _rewardConsumptionDuration = 3D; - _interTrialIntervalDuration = new Distribution(); - _blockLen = new Distribution(); - _minBlockReward = 1; - _kernelSize = 2; - _rewardProbabilityParameters = new RewardProbabilityParameters(); - _isBaiting = false; - _trialGenerationEndParameters = new CoupledTrialGenerationEndConditions(); - _behaviorStabilityParameters = new BehaviorStabilityParameters(); - _extendBlockOnNoResponse = true; - } - - protected CoupledTrialGeneratorSpec(CoupledTrialGeneratorSpec other) : - base(other) - { - _quiescentDuration = other._quiescentDuration; - _responseDuration = other._responseDuration; - _rewardConsumptionDuration = other._rewardConsumptionDuration; - _interTrialIntervalDuration = other._interTrialIntervalDuration; - _blockLen = other._blockLen; - _minBlockReward = other._minBlockReward; - _kernelSize = other._kernelSize; - _rewardProbabilityParameters = other._rewardProbabilityParameters; - _isBaiting = other._isBaiting; - _trialGenerationEndParameters = other._trialGenerationEndParameters; - _behaviorStabilityParameters = other._behaviorStabilityParameters; - _extendBlockOnNoResponse = other._extendBlockOnNoResponse; - } - - /// - /// Distribution describing the quiescence period before trial starts (in seconds). Each lick resets the timer. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("quiescent_duration")] - [System.ComponentModel.DescriptionAttribute("Distribution describing the quiescence period before trial starts (in seconds). E" + - "ach lick resets the timer.")] - public Distribution QuiescentDuration - { - get - { - return _quiescentDuration; - } - set - { - _quiescentDuration = value; - } - } - - /// - /// Duration after go cue for animal response. - /// - [Newtonsoft.Json.JsonPropertyAttribute("response_duration")] - [System.ComponentModel.DescriptionAttribute("Duration after go cue for animal response.")] - public double ResponseDuration - { - get - { - return _responseDuration; - } - set - { - _responseDuration = value; - } - } - - /// - /// Duration of reward consumption before transition to ITI (in seconds). - /// - [Newtonsoft.Json.JsonPropertyAttribute("reward_consumption_duration")] - [System.ComponentModel.DescriptionAttribute("Duration of reward consumption before transition to ITI (in seconds).")] - public double RewardConsumptionDuration - { - get - { - return _rewardConsumptionDuration; - } - set - { - _rewardConsumptionDuration = value; - } - } - - /// - /// Distribution describing the inter-trial interval (in seconds). - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("inter_trial_interval_duration")] - [System.ComponentModel.DescriptionAttribute("Distribution describing the inter-trial interval (in seconds).")] - public Distribution InterTrialIntervalDuration - { - get - { - return _interTrialIntervalDuration; - } - set - { - _interTrialIntervalDuration = value; - } - } - - /// - /// Distribution describing block length. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("block_len")] - [System.ComponentModel.DescriptionAttribute("Distribution describing block length.")] - public Distribution BlockLen - { - get - { - return _blockLen; - } - set - { - _blockLen = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("min_block_reward")] - public int MinBlockReward - { - get - { - return _minBlockReward; - } - set - { - _minBlockReward = value; - } - } - - /// - /// Kernel to evaluate choice fraction. - /// - [Newtonsoft.Json.JsonPropertyAttribute("kernel_size")] - [System.ComponentModel.DescriptionAttribute("Kernel to evaluate choice fraction.")] - public int KernelSize - { - get - { - return _kernelSize; - } - set - { - _kernelSize = value; - } - } - - /// - /// Parameters defining the reward probability structure. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("reward_probability_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters defining the reward probability structure.")] - public RewardProbabilityParameters RewardProbabilityParameters - { - get - { - return _rewardProbabilityParameters; - } - set - { - _rewardProbabilityParameters = value; - } - } - - /// - /// Whether uncollected rewards carry over to the next trial. - /// - [Newtonsoft.Json.JsonPropertyAttribute("is_baiting")] - [System.ComponentModel.DescriptionAttribute("Whether uncollected rewards carry over to the next trial.")] - public bool IsBaiting - { - get - { - return _isBaiting; - } - set - { - _isBaiting = value; - } - } - - /// - /// Conditions to end trial generation. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("trial_generation_end_parameters")] - [System.ComponentModel.DescriptionAttribute("Conditions to end trial generation.")] - public CoupledTrialGenerationEndConditions TrialGenerationEndParameters - { - get - { - return _trialGenerationEndParameters; - } - set - { - _trialGenerationEndParameters = value; - } - } - - /// - /// Parameters controlling behavior-dependent block switching. If None, block switches rely only on length and reward criteria. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("behavior_stability_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters controlling behavior-dependent block switching. If None, block switche" + - "s rely only on length and reward criteria.")] - public BehaviorStabilityParameters BehaviorStabilityParameters - { - get - { - return _behaviorStabilityParameters; - } - set - { - _behaviorStabilityParameters = value; - } - } - - /// - /// Whether to extend the minimum block length by one trial when the animal does not respond. - /// - [Newtonsoft.Json.JsonPropertyAttribute("extend_block_on_no_response")] - [System.ComponentModel.DescriptionAttribute("Whether to extend the minimum block length by one trial when the animal does not " + - "respond.")] - public bool ExtendBlockOnNoResponse - { - get - { - return _extendBlockOnNoResponse; - } - set - { - _extendBlockOnNoResponse = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new CoupledTrialGeneratorSpec(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new CoupledTrialGeneratorSpec(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("QuiescentDuration = " + _quiescentDuration + ", "); - stringBuilder.Append("ResponseDuration = " + _responseDuration + ", "); - stringBuilder.Append("RewardConsumptionDuration = " + _rewardConsumptionDuration + ", "); - stringBuilder.Append("InterTrialIntervalDuration = " + _interTrialIntervalDuration + ", "); - stringBuilder.Append("BlockLen = " + _blockLen + ", "); - stringBuilder.Append("MinBlockReward = " + _minBlockReward + ", "); - stringBuilder.Append("KernelSize = " + _kernelSize + ", "); - stringBuilder.Append("RewardProbabilityParameters = " + _rewardProbabilityParameters + ", "); - stringBuilder.Append("IsBaiting = " + _isBaiting + ", "); - stringBuilder.Append("TrialGenerationEndParameters = " + _trialGenerationEndParameters + ", "); - stringBuilder.Append("BehaviorStabilityParameters = " + _behaviorStabilityParameters + ", "); - stringBuilder.Append("ExtendBlockOnNoResponse = " + _extendBlockOnNoResponse); - return true; - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "family")] - [JsonInheritanceAttribute("Scalar", typeof(Scalar))] - [JsonInheritanceAttribute("Beta", typeof(BetaDistribution))] - [JsonInheritanceAttribute("Binomial", typeof(BinomialDistribution))] - [JsonInheritanceAttribute("Exponential", typeof(ExponentialDistribution))] - [JsonInheritanceAttribute("Normal", typeof(NormalDistribution))] - [JsonInheritanceAttribute("LogNormal", typeof(LogNormalDistribution))] - [JsonInheritanceAttribute("Uniform", typeof(UniformDistribution))] - [JsonInheritanceAttribute("Poisson", typeof(PoissonDistribution))] - [JsonInheritanceAttribute("Gamma", typeof(GammaDistribution))] - [JsonInheritanceAttribute("Pdf", typeof(PdfDistribution))] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class Distribution - { - - public Distribution() - { - } - - protected Distribution(Distribution other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Distribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new Distribution(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// A calibrated sound card for the dynamic foraging rig. This is a subclass of the HarpSoundCard that includes the sound card calibration. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A calibrated sound card for the dynamic foraging rig. This is a subclass of the H" + - "arpSoundCard that includes the sound card calibration.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class DynamicForagingSoundCard - { - - private string _deviceType; - - private SoundCardCalibration _calibration; - - private int _whoAmI; - - private string _serialNumber; - - private string _portName; - - public DynamicForagingSoundCard() - { - _deviceType = "SoundCard"; - _calibration = new SoundCardCalibration(); - _whoAmI = 1280; - } - - protected DynamicForagingSoundCard(DynamicForagingSoundCard other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _whoAmI = other._whoAmI; - _serialNumber = other._serialNumber; - _portName = other._portName; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Sound card calibration - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Sound card calibration")] - public SoundCardCalibration Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] - public int WhoAmI - { - get - { - return _whoAmI; - } - set - { - _whoAmI = value; - } - } - - /// - /// Device serial number - /// - [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] - [System.ComponentModel.DescriptionAttribute("Device serial number")] - public string SerialNumber - { - get - { - return _serialNumber; - } - set - { - _serialNumber = value; - } - } - - /// - /// Device port name - /// - [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Device port name")] - public string PortName - { - get - { - return _portName; - } - set - { - _portName = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new DynamicForagingSoundCard(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new DynamicForagingSoundCard(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// An exponential probability distribution. - /// - ///Models time between events in a Poisson process. Commonly used - ///for wait times and inter-event intervals. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("An exponential probability distribution.\n\nModels time between events in a Poisson" + - " process. Commonly used\nfor wait times and inter-event intervals.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ExponentialDistribution : Distribution - { - - private ExponentialDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public ExponentialDistribution() - { - _distributionParameters = new ExponentialDistributionParameters(); - } - - protected ExponentialDistribution(ExponentialDistribution other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public ExponentialDistributionParameters DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } - } - - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters - { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } - } - - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters - { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ExponentialDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new ExponentialDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for an exponential distribution. - /// - ///Defined by the rate parameter (inverse of mean). - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for an exponential distribution.\n\nDefined by the rate parameter (inver" + - "se of mean).")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ExponentialDistributionParameters - { - - private string _family; - - private double _rate; - - public ExponentialDistributionParameters() - { - _family = "Exponential"; - _rate = 0D; - } - - protected ExponentialDistributionParameters(ExponentialDistributionParameters other) - { - _family = other._family; - _rate = other._rate; - } - - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family - { - get - { - return _family; - } - set - { - _family = value; - } - } - - /// - /// Rate parameter of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("rate")] - [System.ComponentModel.DescriptionAttribute("Rate parameter of the distribution")] - public double Rate - { - get - { - return _rate; - } - set - { - _rate = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ExponentialDistributionParameters(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new ExponentialDistributionParameters(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Rate = " + _rate); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// A gamma probability distribution. - /// - ///Generalizes the exponential distribution. Used for modeling - ///positive continuous variables with right-skewed distributions. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A gamma probability distribution.\n\nGeneralizes the exponential distribution. Used" + - " for modeling\npositive continuous variables with right-skewed distributions.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class GammaDistribution : Distribution - { - - private GammaDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public GammaDistribution() - { - _distributionParameters = new GammaDistributionParameters(); - } - - protected GammaDistribution(GammaDistribution other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public GammaDistributionParameters DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } - } - - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters - { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } - } - - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters - { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new GammaDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new GammaDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a gamma distribution. - /// - ///Defined by shape (k) and rate (θ⁻¹) parameters. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a gamma distribution.\n\nDefined by shape (k) and rate (θ⁻¹) paramet" + - "ers.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class GammaDistributionParameters - { - - private string _family; - - private double _shape; - - private double _rate; - - public GammaDistributionParameters() - { - _family = "Gamma"; - _shape = 1D; - _rate = 1D; - } - - protected GammaDistributionParameters(GammaDistributionParameters other) - { - _family = other._family; - _shape = other._shape; - _rate = other._rate; - } - - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family - { - get - { - return _family; - } - set - { - _family = value; - } - } - - /// - /// Shape parameter of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("shape")] - [System.ComponentModel.DescriptionAttribute("Shape parameter of the distribution")] - public double Shape - { - get - { - return _shape; - } - set - { - _shape = value; - } - } - - /// - /// Rate parameter of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("rate")] - [System.ComponentModel.DescriptionAttribute("Rate parameter of the distribution")] - public double Rate - { - get - { - return _rate; - } - set - { - _rate = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new GammaDistributionParameters(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new GammaDistributionParameters(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Shape = " + _shape + ", "); - stringBuilder.Append("Rate = " + _rate); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class HarpBehavior - { - - private string _deviceType; - - private BaseModel _calibration; - - private int _whoAmI; - - private string _serialNumber; - - private string _portName; - - public HarpBehavior() - { - _deviceType = "Behavior"; - _whoAmI = 1216; - } - - protected HarpBehavior(HarpBehavior other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _whoAmI = other._whoAmI; - _serialNumber = other._serialNumber; - _portName = other._portName; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] - public int WhoAmI - { - get - { - return _whoAmI; - } - set - { - _whoAmI = value; - } - } - - /// - /// Device serial number - /// - [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] - [System.ComponentModel.DescriptionAttribute("Device serial number")] - public string SerialNumber - { - get - { - return _serialNumber; - } - set - { - _serialNumber = value; - } - } - - /// - /// Device port name - /// - [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Device port name")] - public string PortName - { - get - { - return _portName; - } - set - { - _portName = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpBehavior(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new HarpBehavior(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class HarpEnvironmentSensor - { - - private string _deviceType; - - private BaseModel _calibration; - - private int _whoAmI; - - private string _serialNumber; - - private string _portName; - - public HarpEnvironmentSensor() - { - _deviceType = "EnvironmentSensor"; - _whoAmI = 1405; - } - - protected HarpEnvironmentSensor(HarpEnvironmentSensor other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _whoAmI = other._whoAmI; - _serialNumber = other._serialNumber; - _portName = other._portName; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] - public int WhoAmI - { - get - { - return _whoAmI; - } - set - { - _whoAmI = value; - } - } - - /// - /// Device serial number - /// - [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] - [System.ComponentModel.DescriptionAttribute("Device serial number")] - public string SerialNumber - { - get - { - return _serialNumber; - } - set - { - _serialNumber = value; - } - } - - /// - /// Device port name - /// - [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Device port name")] - public string PortName - { - get - { - return _portName; - } - set - { - _portName = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpEnvironmentSensor(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new HarpEnvironmentSensor(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class HarpLicketySplit - { - - private string _deviceType; - - private BaseModel _calibration; - - private int _whoAmI; - - private string _serialNumber; - - private string _portName; - - public HarpLicketySplit() - { - _deviceType = "LicketySplit"; - _whoAmI = 1400; - } - - protected HarpLicketySplit(HarpLicketySplit other) - { - _deviceType = other._deviceType; - _calibration = other._calibration; - _whoAmI = other._whoAmI; - _serialNumber = other._serialNumber; - _portName = other._portName; - } - - [Newtonsoft.Json.JsonPropertyAttribute("device_type")] - public string DeviceType - { - get - { - return _deviceType; - } - set - { - _deviceType = value; - } - } - - /// - /// Calibration for the device. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration - { - get - { - return _calibration; - } - set - { - _calibration = value; - } - } - - [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] - public int WhoAmI - { - get - { - return _whoAmI; - } - set - { - _whoAmI = value; - } - } - - /// - /// Device serial number - /// - [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] - [System.ComponentModel.DescriptionAttribute("Device serial number")] - public string SerialNumber - { - get - { - return _serialNumber; - } - set - { - _serialNumber = value; - } - } - - /// - /// Device port name - /// - [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Device port name")] - public string PortName - { - get - { - return _portName; - } - set - { - _portName = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpLicketySplit(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new HarpLicketySplit(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName); - return true; + + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) + { + return false; } public override string ToString() @@ -3762,15 +1793,20 @@ public override string ToString() } + /// + /// A calibrated sound card for the dynamic foraging rig. This is a subclass of the HarpSoundCard that includes the sound card calibration. + /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.ComponentModel.DescriptionAttribute("A calibrated sound card for the dynamic foraging rig. This is a subclass of the H" + + "arpSoundCard that includes the sound card calibration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class HarpSniffDetector + public partial class DynamicForagingSoundCard { private string _deviceType; - private BaseModel _calibration; + private SoundCardCalibration _calibration; private int _whoAmI; @@ -3778,13 +1814,14 @@ public partial class HarpSniffDetector private string _portName; - public HarpSniffDetector() + public DynamicForagingSoundCard() { - _deviceType = "SniffDetector"; - _whoAmI = 1401; + _deviceType = "SoundCard"; + _calibration = new SoundCardCalibration(); + _whoAmI = 1280; } - protected HarpSniffDetector(HarpSniffDetector other) + protected DynamicForagingSoundCard(DynamicForagingSoundCard other) { _deviceType = other._deviceType; _calibration = other._calibration; @@ -3807,12 +1844,12 @@ public string DeviceType } /// - /// Calibration for the device. + /// Sound card calibration /// [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("calibration")] - [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] - public BaseModel Calibration + [System.ComponentModel.DescriptionAttribute("Sound card calibration")] + public SoundCardCalibration Calibration { get { @@ -3871,14 +1908,14 @@ public string PortName } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpSniffDetector(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new DynamicForagingSoundCard(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new HarpSniffDetector(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new DynamicForagingSoundCard(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) @@ -3909,7 +1946,7 @@ public override string ToString() [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class HarpWhiteRabbit + public partial class HarpBehavior { private string _deviceType; @@ -3922,23 +1959,19 @@ public partial class HarpWhiteRabbit private string _portName; - private System.Collections.Generic.List _connectedClockOutputs; - - public HarpWhiteRabbit() + public HarpBehavior() { - _deviceType = "WhiteRabbit"; - _whoAmI = 1404; - _connectedClockOutputs = new System.Collections.Generic.List(); + _deviceType = "Behavior"; + _whoAmI = 1216; } - protected HarpWhiteRabbit(HarpWhiteRabbit other) + protected HarpBehavior(HarpBehavior other) { _deviceType = other._deviceType; _calibration = other._calibration; _whoAmI = other._whoAmI; _serialNumber = other._serialNumber; _portName = other._portName; - _connectedClockOutputs = other._connectedClockOutputs; } [Newtonsoft.Json.JsonPropertyAttribute("device_type")] @@ -4019,299 +2052,23 @@ public string PortName } } - /// - /// Connected clock outputs - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("connected_clock_outputs")] - [System.ComponentModel.DescriptionAttribute("Connected clock outputs")] - public System.Collections.Generic.List ConnectedClockOutputs - { - get - { - return _connectedClockOutputs; - } - set - { - _connectedClockOutputs = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpWhiteRabbit(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new HarpWhiteRabbit(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("DeviceType = " + _deviceType + ", "); - stringBuilder.Append("Calibration = " + _calibration + ", "); - stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); - stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); - stringBuilder.Append("PortName = " + _portName + ", "); - stringBuilder.Append("ConnectedClockOutputs = " + _connectedClockOutputs); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class IntegrationTestTrialGeneratorSpec : TrialGeneratorSpec - { - - public IntegrationTestTrialGeneratorSpec() - { - } - - protected IntegrationTestTrialGeneratorSpec(IntegrationTestTrialGeneratorSpec other) : - base(other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new IntegrationTestTrialGeneratorSpec(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new IntegrationTestTrialGeneratorSpec(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return base.PrintMembers(stringBuilder); - } - } - - - /// - /// A log-normal probability distribution. - /// - ///Distribution where the logarithm of the variable is normally distributed. - ///Always produces positive values and is right-skewed. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A log-normal probability distribution.\n\nDistribution where the logarithm of the v" + - "ariable is normally distributed.\nAlways produces positive values and is right-sk" + - "ewed.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class LogNormalDistribution : Distribution - { - - private LogNormalDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public LogNormalDistribution() - { - _distributionParameters = new LogNormalDistributionParameters(); - } - - protected LogNormalDistribution(LogNormalDistribution other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public LogNormalDistributionParameters DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } - } - - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters - { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } - } - - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters - { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new LogNormalDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new LogNormalDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a log-normal distribution. - /// - ///Defined by the mean and standard deviation of the underlying normal distribution. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a log-normal distribution.\n\nDefined by the mean and standard devia" + - "tion of the underlying normal distribution.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class LogNormalDistributionParameters - { - - private string _family; - - private double _mean; - - private double _std; - - public LogNormalDistributionParameters() - { - _family = "LogNormal"; - _mean = 0D; - _std = 0D; - } - - protected LogNormalDistributionParameters(LogNormalDistributionParameters other) - { - _family = other._family; - _mean = other._mean; - _std = other._std; - } - - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family - { - get - { - return _family; - } - set - { - _family = value; - } - } - - /// - /// Mean of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("mean")] - [System.ComponentModel.DescriptionAttribute("Mean of the distribution")] - public double Mean - { - get - { - return _mean; - } - set - { - _mean = value; - } - } - - /// - /// Standard deviation of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("std")] - [System.ComponentModel.DescriptionAttribute("Standard deviation of the distribution")] - public double Std - { - get - { - return _std; - } - set - { - _std = value; - } - } - - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new LogNormalDistributionParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpBehavior(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new LogNormalDistributionParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new HarpBehavior(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Mean = " + _mean + ", "); - stringBuilder.Append("Std = " + _std); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); + stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); + stringBuilder.Append("PortName = " + _portName); return true; } @@ -4330,104 +2087,132 @@ public override string ToString() } - /// - /// Represents a position in the manipulator coordinate system - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Represents a position in the manipulator coordinate system")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ManipulatorPosition + public partial class HarpEnvironmentSensor { - private double _x; + private string _deviceType; + + private BaseModel _calibration; - private double _y1; + private int _whoAmI; - private double _y2; + private string _serialNumber; - private double _z; + private string _portName; - public ManipulatorPosition() + public HarpEnvironmentSensor() { + _deviceType = "EnvironmentSensor"; + _whoAmI = 1405; } - protected ManipulatorPosition(ManipulatorPosition other) + protected HarpEnvironmentSensor(HarpEnvironmentSensor other) { - _x = other._x; - _y1 = other._y1; - _y2 = other._y2; - _z = other._z; + _deviceType = other._deviceType; + _calibration = other._calibration; + _whoAmI = other._whoAmI; + _serialNumber = other._serialNumber; + _portName = other._portName; } - [Newtonsoft.Json.JsonPropertyAttribute("x", Required=Newtonsoft.Json.Required.Always)] - public double X + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _x; + return _deviceType; } set { - _x = value; + _deviceType = value; + } + } + + /// + /// Calibration for the device. + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration + { + get + { + return _calibration; + } + set + { + _calibration = value; } } - [Newtonsoft.Json.JsonPropertyAttribute("y1", Required=Newtonsoft.Json.Required.Always)] - public double Y1 + [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] + public int WhoAmI { get { - return _y1; + return _whoAmI; } set { - _y1 = value; + _whoAmI = value; } } - [Newtonsoft.Json.JsonPropertyAttribute("y2", Required=Newtonsoft.Json.Required.Always)] - public double Y2 + /// + /// Device serial number + /// + [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] + [System.ComponentModel.DescriptionAttribute("Device serial number")] + public string SerialNumber { get { - return _y2; + return _serialNumber; } set { - _y2 = value; + _serialNumber = value; } } - [Newtonsoft.Json.JsonPropertyAttribute("z", Required=Newtonsoft.Json.Required.Always)] - public double Z + /// + /// Device port name + /// + [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Device port name")] + public string PortName { get { - return _z; + return _portName; } set { - _z = value; + _portName = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ManipulatorPosition(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpEnvironmentSensor(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new ManipulatorPosition(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new HarpEnvironmentSensor(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("X = " + _x + ", "); - stringBuilder.Append("Y1 = " + _y1 + ", "); - stringBuilder.Append("Y2 = " + _y2 + ", "); - stringBuilder.Append("Z = " + _z); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); + stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); + stringBuilder.Append("PortName = " + _portName); return true; } @@ -4446,122 +2231,132 @@ public override string ToString() } - /// - /// Input for water valve calibration class - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Input for water valve calibration class")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class Measurement + public partial class HarpLicketySplit { - private double _valveOpenInterval; + private string _deviceType; - private double _valveOpenTime; + private BaseModel _calibration; - private System.Collections.Generic.List _waterWeight; + private int _whoAmI; - private int _repeatCount; + private string _serialNumber; - public Measurement() + private string _portName; + + public HarpLicketySplit() { - _waterWeight = new System.Collections.Generic.List(); + _deviceType = "LicketySplit"; + _whoAmI = 1400; } - protected Measurement(Measurement other) + protected HarpLicketySplit(HarpLicketySplit other) { - _valveOpenInterval = other._valveOpenInterval; - _valveOpenTime = other._valveOpenTime; - _waterWeight = other._waterWeight; - _repeatCount = other._repeatCount; + _deviceType = other._deviceType; + _calibration = other._calibration; + _whoAmI = other._whoAmI; + _serialNumber = other._serialNumber; + _portName = other._portName; } - /// - /// Time between two consecutive valve openings (s) - /// - [Newtonsoft.Json.JsonPropertyAttribute("valve_open_interval", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Time between two consecutive valve openings (s)")] - public double ValveOpenInterval + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _valveOpenInterval; + return _deviceType; } set { - _valveOpenInterval = value; + _deviceType = value; } } /// - /// Valve open interval (s) + /// Calibration for the device. /// - [Newtonsoft.Json.JsonPropertyAttribute("valve_open_time", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Valve open interval (s)")] - public double ValveOpenTime + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration { get { - return _valveOpenTime; + return _calibration; } set { - _valveOpenTime = value; + _calibration = value; + } + } + + [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] + public int WhoAmI + { + get + { + return _whoAmI; + } + set + { + _whoAmI = value; } } /// - /// Weight of water delivered (g) + /// Device serial number /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("water_weight", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Weight of water delivered (g)")] - public System.Collections.Generic.List WaterWeight + [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] + [System.ComponentModel.DescriptionAttribute("Device serial number")] + public string SerialNumber { get { - return _waterWeight; + return _serialNumber; } set { - _waterWeight = value; + _serialNumber = value; } } /// - /// Number of times the valve opened. + /// Device port name /// - [Newtonsoft.Json.JsonPropertyAttribute("repeat_count", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Number of times the valve opened.")] - public int RepeatCount + [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Device port name")] + public string PortName { get { - return _repeatCount; + return _portName; } set { - _repeatCount = value; + _portName = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Measurement(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpLicketySplit(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new Measurement(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new HarpLicketySplit(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("ValveOpenInterval = " + _valveOpenInterval + ", "); - stringBuilder.Append("ValveOpenTime = " + _valveOpenTime + ", "); - stringBuilder.Append("WaterWeight = " + _waterWeight + ", "); - stringBuilder.Append("RepeatCount = " + _repeatCount); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); + stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); + stringBuilder.Append("PortName = " + _portName); return true; } @@ -4580,249 +2375,132 @@ public override string ToString() } - /// - /// Microstep resolution available - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - public enum MicrostepResolution - { - - [System.Runtime.Serialization.EnumMemberAttribute(Value="0")] - Microstep8 = 0, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="1")] - Microstep16 = 1, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="2")] - Microstep32 = 2, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="3")] - Microstep64 = 3, - } - - - /// - /// Motor operation mode - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - public enum MotorOperationMode - { - - [System.Runtime.Serialization.EnumMemberAttribute(Value="0")] - Quiet = 0, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="1")] - Dynamic = 1, - } - - - /// - /// A normal (Gaussian) probability distribution. - /// - ///Bell-shaped distribution symmetric around the mean, commonly used - ///for modeling naturally occurring random variables. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A normal (Gaussian) probability distribution.\n\nBell-shaped distribution symmetric" + - " around the mean, commonly used\nfor modeling naturally occurring random variable" + - "s.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class NormalDistribution : Distribution + public partial class HarpSniffDetector { - private NormalDistributionParameters _distributionParameters; + private string _deviceType; + + private BaseModel _calibration; - private TruncationParameters _truncationParameters; + private int _whoAmI; - private ScalingParameters _scalingParameters; + private string _serialNumber; - public NormalDistribution() - { - _distributionParameters = new NormalDistributionParameters(); - } + private string _portName; - protected NormalDistribution(NormalDistribution other) : - base(other) + public HarpSniffDetector() { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; + _deviceType = "SniffDetector"; + _whoAmI = 1401; } - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public NormalDistributionParameters DistributionParameters + protected HarpSniffDetector(HarpSniffDetector other) { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } + _deviceType = other._deviceType; + _calibration = other._calibration; + _whoAmI = other._whoAmI; + _serialNumber = other._serialNumber; + _portName = other._portName; } - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _truncationParameters; + return _deviceType; } set { - _truncationParameters = value; + _deviceType = value; } } /// - /// Scaling parameters of the distribution + /// Calibration for the device. /// [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration { get { - return _scalingParameters; + return _calibration; } set { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new NormalDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new NormalDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); + _calibration = value; } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a normal (Gaussian) distribution. - /// - ///Defined by mean (center) and standard deviation (spread). - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a normal (Gaussian) distribution.\n\nDefined by mean (center) and st" + - "andard deviation (spread).")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class NormalDistributionParameters - { - - private string _family; - - private double _mean; - - private double _std; - - public NormalDistributionParameters() - { - _family = "Normal"; - _mean = 0D; - _std = 0D; - } - - protected NormalDistributionParameters(NormalDistributionParameters other) - { - _family = other._family; - _mean = other._mean; - _std = other._std; } - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family + [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] + public int WhoAmI { get { - return _family; + return _whoAmI; } set { - _family = value; + _whoAmI = value; } } /// - /// Mean of the distribution + /// Device serial number /// - [Newtonsoft.Json.JsonPropertyAttribute("mean")] - [System.ComponentModel.DescriptionAttribute("Mean of the distribution")] - public double Mean + [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] + [System.ComponentModel.DescriptionAttribute("Device serial number")] + public string SerialNumber { get { - return _mean; + return _serialNumber; } set { - _mean = value; + _serialNumber = value; } } /// - /// Standard deviation of the distribution + /// Device port name /// - [Newtonsoft.Json.JsonPropertyAttribute("std")] - [System.ComponentModel.DescriptionAttribute("Standard deviation of the distribution")] - public double Std + [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Device port name")] + public string PortName { get { - return _std; + return _portName; } set { - _std = value; + _portName = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new NormalDistributionParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpSniffDetector(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new NormalDistributionParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new HarpSniffDetector(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Mean = " + _mean + ", "); - stringBuilder.Append("Std = " + _std); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); + stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); + stringBuilder.Append("PortName = " + _portName); return true; } @@ -4841,217 +2519,155 @@ public override string ToString() } - /// - /// A custom probability density function distribution. - /// - ///Allows defining arbitrary discrete distributions by specifying - ///probability values and their corresponding indices. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A custom probability density function distribution.\n\nAllows defining arbitrary di" + - "screte distributions by specifying\nprobability values and their corresponding in" + - "dices.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PdfDistribution : Distribution + public partial class HarpWhiteRabbit { - private PdfDistributionParameters _distributionParameters; + private string _deviceType; + + private BaseModel _calibration; + + private int _whoAmI; + + private string _serialNumber; - private TruncationParameters _truncationParameters; + private string _portName; - private ScalingParameters _scalingParameters; + private System.Collections.Generic.List _connectedClockOutputs; - public PdfDistribution() + public HarpWhiteRabbit() { - _distributionParameters = new PdfDistributionParameters(); + _deviceType = "WhiteRabbit"; + _whoAmI = 1404; + _connectedClockOutputs = new System.Collections.Generic.List(); } - protected PdfDistribution(PdfDistribution other) : - base(other) + protected HarpWhiteRabbit(HarpWhiteRabbit other) { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; + _deviceType = other._deviceType; + _calibration = other._calibration; + _whoAmI = other._whoAmI; + _serialNumber = other._serialNumber; + _portName = other._portName; + _connectedClockOutputs = other._connectedClockOutputs; } - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public PdfDistributionParameters DistributionParameters + [Newtonsoft.Json.JsonPropertyAttribute("device_type")] + public string DeviceType { get { - return _distributionParameters; + return _deviceType; } set { - _distributionParameters = value; + _deviceType = value; } } /// - /// Truncation parameters of the distribution + /// Calibration for the device. /// [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters + [Newtonsoft.Json.JsonPropertyAttribute("calibration")] + [System.ComponentModel.DescriptionAttribute("Calibration for the device.")] + public BaseModel Calibration { get { - return _truncationParameters; + return _calibration; } set { - _truncationParameters = value; + _calibration = value; } } - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters + [Newtonsoft.Json.JsonPropertyAttribute("who_am_i")] + public int WhoAmI { get { - return _scalingParameters; + return _whoAmI; } set { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new PdfDistribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new PdfDistribution(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); + _whoAmI = value; } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a custom probability density function distribution. - /// - ///Defined by explicit probability values and their corresponding indices. - ///Probabilities are automatically normalized to sum to 1. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a custom probability density function distribution.\n\nDefined by ex" + - "plicit probability values and their corresponding indices.\nProbabilities are aut" + - "omatically normalized to sum to 1.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PdfDistributionParameters - { - - private string _family; - - private System.Collections.Generic.List _pdf; - - private System.Collections.Generic.List _index; - - public PdfDistributionParameters() - { - _family = "Pdf"; - _pdf = new System.Collections.Generic.List(); - _index = new System.Collections.Generic.List(); - } - - protected PdfDistributionParameters(PdfDistributionParameters other) - { - _family = other._family; - _pdf = other._pdf; - _index = other._index; } - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family + /// + /// Device serial number + /// + [Newtonsoft.Json.JsonPropertyAttribute("serial_number")] + [System.ComponentModel.DescriptionAttribute("Device serial number")] + public string SerialNumber { get { - return _family; + return _serialNumber; } set { - _family = value; + _serialNumber = value; } } /// - /// The probability density function + /// Device port name /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("pdf")] - [System.ComponentModel.DescriptionAttribute("The probability density function")] - public System.Collections.Generic.List Pdf + [Newtonsoft.Json.JsonPropertyAttribute("port_name", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Device port name")] + public string PortName { get { - return _pdf; + return _portName; } set { - _pdf = value; + _portName = value; } } /// - /// The index of the probability density function + /// Connected clock outputs /// [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("index")] - [System.ComponentModel.DescriptionAttribute("The index of the probability density function")] - public System.Collections.Generic.List Index + [Newtonsoft.Json.JsonPropertyAttribute("connected_clock_outputs")] + [System.ComponentModel.DescriptionAttribute("Connected clock outputs")] + public System.Collections.Generic.List ConnectedClockOutputs { get { - return _index; + return _connectedClockOutputs; } set { - _index = value; + _connectedClockOutputs = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new PdfDistributionParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new HarpWhiteRabbit(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new PdfDistributionParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new HarpWhiteRabbit(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Pdf = " + _pdf + ", "); - stringBuilder.Append("Index = " + _index); + stringBuilder.Append("DeviceType = " + _deviceType + ", "); + stringBuilder.Append("Calibration = " + _calibration + ", "); + stringBuilder.Append("WhoAmI = " + _whoAmI + ", "); + stringBuilder.Append("SerialNumber = " + _serialNumber + ", "); + stringBuilder.Append("PortName = " + _portName + ", "); + stringBuilder.Append("ConnectedClockOutputs = " + _connectedClockOutputs); return true; } @@ -5070,191 +2686,154 @@ public override string ToString() } - /// - /// A Poisson probability distribution. - /// - ///Models the number of events occurring in a fixed interval of time or space - ///when events occur independently at a constant rate. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A Poisson probability distribution.\n\nModels the number of events occurring in a f" + - "ixed interval of time or space\nwhen events occur independently at a constant rat" + - "e.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PoissonDistribution : Distribution + public partial class IntegrationTestTrialGeneratorSpec : TrialGeneratorSpec { - private PoissonDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public PoissonDistribution() + public IntegrationTestTrialGeneratorSpec() { - _distributionParameters = new PoissonDistributionParameters(); } - protected PoissonDistribution(PoissonDistribution other) : + protected IntegrationTestTrialGeneratorSpec(IntegrationTestTrialGeneratorSpec other) : base(other) { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public PoissonDistributionParameters DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } - } - - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters - { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } - } - - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters - { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new PoissonDistribution(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new IntegrationTestTrialGeneratorSpec(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new PoissonDistribution(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new IntegrationTestTrialGeneratorSpec(this)); } protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; + return base.PrintMembers(stringBuilder); } } /// - /// Parameters for a Poisson distribution. - /// - ///Defined by the rate parameter (average number of events). + /// Input for water valve calibration class /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a Poisson distribution.\n\nDefined by the rate parameter (average nu" + - "mber of events).")] + [System.ComponentModel.DescriptionAttribute("Input for water valve calibration class")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PoissonDistributionParameters + public partial class Measurement { - private string _family; + private double _valveOpenInterval; + + private double _valveOpenTime; + + private System.Collections.Generic.List _waterWeight; + + private int _repeatCount; + + public Measurement() + { + _waterWeight = new System.Collections.Generic.List(); + } - private double _rate; + protected Measurement(Measurement other) + { + _valveOpenInterval = other._valveOpenInterval; + _valveOpenTime = other._valveOpenTime; + _waterWeight = other._waterWeight; + _repeatCount = other._repeatCount; + } - public PoissonDistributionParameters() + /// + /// Time between two consecutive valve openings (s) + /// + [Newtonsoft.Json.JsonPropertyAttribute("valve_open_interval", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Time between two consecutive valve openings (s)")] + public double ValveOpenInterval { - _family = "Poisson"; - _rate = 1D; + get + { + return _valveOpenInterval; + } + set + { + _valveOpenInterval = value; + } } - protected PoissonDistributionParameters(PoissonDistributionParameters other) + /// + /// Valve open interval (s) + /// + [Newtonsoft.Json.JsonPropertyAttribute("valve_open_time", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Valve open interval (s)")] + public double ValveOpenTime { - _family = other._family; - _rate = other._rate; + get + { + return _valveOpenTime; + } + set + { + _valveOpenTime = value; + } } - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family + /// + /// Weight of water delivered (g) + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("water_weight", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Weight of water delivered (g)")] + public System.Collections.Generic.List WaterWeight { get { - return _family; + return _waterWeight; } set { - _family = value; + _waterWeight = value; } } /// - /// Rate parameter of the Poisson process that generates the distribution + /// Number of times the valve opened. /// - [Newtonsoft.Json.JsonPropertyAttribute("rate")] - [System.ComponentModel.DescriptionAttribute("Rate parameter of the Poisson process that generates the distribution")] - public double Rate + [Newtonsoft.Json.JsonPropertyAttribute("repeat_count", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Number of times the valve opened.")] + public int RepeatCount { get { - return _rate; + return _repeatCount; } set { - _rate = value; + _repeatCount = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new PoissonDistributionParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Measurement(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new PoissonDistributionParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new Measurement(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Rate = " + _rate); + stringBuilder.Append("ValveOpenInterval = " + _valveOpenInterval + ", "); + stringBuilder.Append("ValveOpenTime = " + _valveOpenTime + ", "); + stringBuilder.Append("WaterWeight = " + _waterWeight + ", "); + stringBuilder.Append("RepeatCount = " + _repeatCount); return true; } @@ -5663,308 +3242,18 @@ public WaterValveCalibration WaterValveRight public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new RigCalibration(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new RigCalibration(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("WaterValveLeft = " + _waterValveLeft + ", "); - stringBuilder.Append("WaterValveRight = " + _waterValveRight); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// A scalar distribution that returns a constant value. - /// - ///Useful for fixed parameters that don't vary across trials or samples. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A scalar distribution that returns a constant value.\n\nUseful for fixed parameters" + - " that don\'t vary across trials or samples.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class Scalar : Distribution - { - - private ScalarDistributionParameter _distributionParameters; - - private TruncationParameters2 _truncationParameters; - - private ScalingParameters2 _scalingParameters; - - public Scalar() - { - _distributionParameters = new ScalarDistributionParameter(); - } - - protected Scalar(Scalar other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public ScalarDistributionParameter DistributionParameters - { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } - } - - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - public TruncationParameters2 TruncationParameters - { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } - } - - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - public ScalingParameters2 ScalingParameters - { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Scalar(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new Scalar(this)); - } - - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; - } - } - - - /// - /// Parameters for a scalar (constant) distribution. - /// - ///Represents a deterministic value that always returns the same number. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a scalar (constant) distribution.\n\nRepresents a deterministic valu" + - "e that always returns the same number.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ScalarDistributionParameter - { - - private string _family; - - private double _value; - - public ScalarDistributionParameter() - { - _family = "Scalar"; - _value = 0D; - } - - protected ScalarDistributionParameter(ScalarDistributionParameter other) - { - _family = other._family; - _value = other._value; - } - - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family - { - get - { - return _family; - } - set - { - _family = value; - } - } - - /// - /// The static value of the distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("value")] - [System.ComponentModel.DescriptionAttribute("The static value of the distribution")] - public double Value - { - get - { - return _value; - } - set - { - _value = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ScalarDistributionParameter(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new ScalarDistributionParameter(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Value = " + _value); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// Parameters for scaling and offsetting sampled distribution values. - ///Scaling is applied as (value * scale + offset). - /// - ///Applies linear transformation: result = (value * scale) + offset. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for scaling and offsetting sampled distribution values.\nScaling is app" + - "lied as (value * scale + offset).\n\nApplies linear transformation: result = (valu" + - "e * scale) + offset.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ScalingParameters - { - - private double _scale; - - private double _offset; - - public ScalingParameters() - { - _scale = 1D; - _offset = 0D; - } - - protected ScalingParameters(ScalingParameters other) - { - _scale = other._scale; - _offset = other._offset; - } - - /// - /// Scaling factor to apply on the sampled distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("scale")] - [System.ComponentModel.DescriptionAttribute("Scaling factor to apply on the sampled distribution")] - public double Scale - { - get - { - return _scale; - } - set - { - _scale = value; - } - } - - /// - /// Offset factor to apply on the sampled distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("offset")] - [System.ComponentModel.DescriptionAttribute("Offset factor to apply on the sampled distribution")] - public double Offset - { - get - { - return _offset; - } - set - { - _offset = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ScalingParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new RigCalibration(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new ScalingParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new RigCalibration(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Scale = " + _scale + ", "); - stringBuilder.Append("Offset = " + _offset); + stringBuilder.Append("WaterValveLeft = " + _waterValveLeft + ", "); + stringBuilder.Append("WaterValveRight = " + _waterValveRight); return true; } @@ -6013,8 +3302,8 @@ public partial class Session public Session() { - _aindBehaviorServicesPkgVersion = "0.13.2"; - _version = "0.13.2"; + _aindBehaviorServicesPkgVersion = "0.13.5"; + _version = "0.13.5"; _experimenter = new System.Collections.Generic.List(); _allowDirtyRepo = false; _skipHardwareValidation = false; @@ -7542,495 +4831,142 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class TrialGeneratorSpec - { - - public TrialGeneratorSpec() - { - } - - protected TrialGeneratorSpec(TrialGeneratorSpec other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TrialGeneratorSpec(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new TrialGeneratorSpec(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// Represents the outcome of a single trial. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Represents the outcome of a single trial.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class TrialOutcome - { - - private Trial _trial; - - private bool? _isRightChoice; - - private bool _isRewarded; - - public TrialOutcome() - { - _trial = new Trial(); - } - - protected TrialOutcome(TrialOutcome other) - { - _trial = other._trial; - _isRightChoice = other._isRightChoice; - _isRewarded = other._isRewarded; - } - - /// - /// The trial associated with this outcome. - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("trial", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("The trial associated with this outcome.")] - public Trial Trial - { - get - { - return _trial; - } - set - { - _trial = value; - } - } - - /// - /// Reports the choice made by the subject. True for right, False for left, None for no choice. - /// - [Newtonsoft.Json.JsonPropertyAttribute("is_right_choice", Required=Newtonsoft.Json.Required.AllowNull)] - [System.ComponentModel.DescriptionAttribute("Reports the choice made by the subject. True for right, False for left, None for " + - "no choice.")] - public bool? IsRightChoice - { - get - { - return _isRightChoice; - } - set - { - _isRightChoice = value; - } - } - - /// - /// Indicates whether the subject received a reward on this trial. - /// - [Newtonsoft.Json.JsonPropertyAttribute("is_rewarded", Required=Newtonsoft.Json.Required.Always)] - [System.ComponentModel.DescriptionAttribute("Indicates whether the subject received a reward on this trial.")] - public bool IsRewarded - { - get - { - return _isRewarded; - } - set - { - _isRewarded = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TrialOutcome(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new TrialOutcome(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("Trial = " + _trial + ", "); - stringBuilder.Append("IsRightChoice = " + _isRightChoice + ", "); - stringBuilder.Append("IsRewarded = " + _isRewarded); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// Parameters for truncating a distribution to a specified range. Truncation should - ///be applied after sampling and scaling. - /// - ///The truncation_mode determines how out-of-bounds values are handled: - ///- "exclude": Resample until a value within [min, max] is obtained. - ///If after a certain number of attempts no valid value is found, it - ///will use the average of sampled values and pick the closest bound. - ///- "clamp": Clamp values to the nearest bound within [min, max]. - ///Used to constrain sampled values within minimum and maximum bounds. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute(@"Parameters for truncating a distribution to a specified range. Truncation should - be applied after sampling and scaling. - - The truncation_mode determines how out-of-bounds values are handled: - - ""exclude"": Resample until a value within [min, max] is obtained. - If after a certain number of attempts no valid value is found, it - will use the average of sampled values and pick the closest bound. - - ""clamp"": Clamp values to the nearest bound within [min, max]. - Used to constrain sampled values within minimum and maximum bounds.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class TruncationParameters - { - - private TruncationParametersTruncationMode _truncationMode; - - private double _min; - - private double _max; - - public TruncationParameters() - { - _truncationMode = TruncationParametersTruncationMode.Exclude; - _min = 0D; - _max = 0D; - } - - protected TruncationParameters(TruncationParameters other) - { - _truncationMode = other._truncationMode; - _min = other._min; - _max = other._max; - } - - /// - /// Mode of truncation to apply - /// - [Newtonsoft.Json.JsonPropertyAttribute("truncation_mode")] - [System.ComponentModel.DescriptionAttribute("Mode of truncation to apply")] - public TruncationParametersTruncationMode TruncationMode - { - get - { - return _truncationMode; - } - set - { - _truncationMode = value; - } - } - - /// - /// Minimum value of the sampled distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("min")] - [System.ComponentModel.DescriptionAttribute("Minimum value of the sampled distribution")] - public double Min - { - get - { - return _min; - } - set - { - _min = value; - } - } - - /// - /// Maximum value of the sampled distribution - /// - [Newtonsoft.Json.JsonPropertyAttribute("max")] - [System.ComponentModel.DescriptionAttribute("Maximum value of the sampled distribution")] - public double Max - { - get - { - return _max; - } - set - { - _max = value; - } - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TruncationParameters(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new TruncationParameters(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - stringBuilder.Append("TruncationMode = " + _truncationMode + ", "); - stringBuilder.Append("Min = " + _min + ", "); - stringBuilder.Append("Max = " + _max); - return true; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - /// - /// A uniform probability distribution. - /// - ///All values between min and max have equal probability of being sampled. - /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("A uniform probability distribution.\n\nAll values between min and max have equal pr" + - "obability of being sampled.")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class UniformDistribution : Distribution - { - - private UniformDistributionParameters _distributionParameters; - - private TruncationParameters _truncationParameters; - - private ScalingParameters _scalingParameters; - - public UniformDistribution() - { - _distributionParameters = new UniformDistributionParameters(); - } - - protected UniformDistribution(UniformDistribution other) : - base(other) - { - _distributionParameters = other._distributionParameters; - _truncationParameters = other._truncationParameters; - _scalingParameters = other._scalingParameters; - } - - /// - /// Parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("distribution_parameters")] - [System.ComponentModel.DescriptionAttribute("Parameters of the distribution")] - public UniformDistributionParameters DistributionParameters + { + + public TrialGeneratorSpec() { - get - { - return _distributionParameters; - } - set - { - _distributionParameters = value; - } } - /// - /// Truncation parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("truncation_parameters")] - [System.ComponentModel.DescriptionAttribute("Truncation parameters of the distribution")] - public TruncationParameters TruncationParameters + protected TrialGeneratorSpec(TrialGeneratorSpec other) { - get - { - return _truncationParameters; - } - set - { - _truncationParameters = value; - } } - /// - /// Scaling parameters of the distribution - /// - [System.Xml.Serialization.XmlIgnoreAttribute()] - [Newtonsoft.Json.JsonPropertyAttribute("scaling_parameters")] - [System.ComponentModel.DescriptionAttribute("Scaling parameters of the distribution")] - public ScalingParameters ScalingParameters + public System.IObservable Generate() { - get - { - return _scalingParameters; - } - set - { - _scalingParameters = value; - } + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TrialGeneratorSpec(this))); } - public System.IObservable Generate() + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new UniformDistribution(this))); + return System.Reactive.Linq.Observable.Select(source, _ => new TrialGeneratorSpec(this)); } - public System.IObservable Generate(System.IObservable source) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - return System.Reactive.Linq.Observable.Select(source, _ => new UniformDistribution(this)); + return false; } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + public override string ToString() { - if (base.PrintMembers(stringBuilder)) + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) { - stringBuilder.Append(", "); + stringBuilder.Append(" "); } - stringBuilder.Append("DistributionParameters = " + _distributionParameters + ", "); - stringBuilder.Append("TruncationParameters = " + _truncationParameters + ", "); - stringBuilder.Append("ScalingParameters = " + _scalingParameters); - return true; + stringBuilder.Append("}"); + return stringBuilder.ToString(); } } /// - /// Parameters for a uniform distribution. - /// - ///Defined by minimum and maximum bounds of the distribution. + /// Represents the outcome of a single trial. /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for a uniform distribution.\n\nDefined by minimum and maximum bounds of " + - "the distribution.")] + [System.ComponentModel.DescriptionAttribute("Represents the outcome of a single trial.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class UniformDistributionParameters + public partial class TrialOutcome { - private string _family; + private Trial _trial; - private double _min; + private bool? _isRightChoice; - private double _max; + private bool _isRewarded; - public UniformDistributionParameters() + public TrialOutcome() { - _family = "Uniform"; - _min = 0D; - _max = 0D; + _trial = new Trial(); } - protected UniformDistributionParameters(UniformDistributionParameters other) + protected TrialOutcome(TrialOutcome other) { - _family = other._family; - _min = other._min; - _max = other._max; + _trial = other._trial; + _isRightChoice = other._isRightChoice; + _isRewarded = other._isRewarded; } - [Newtonsoft.Json.JsonPropertyAttribute("family")] - public string Family + /// + /// The trial associated with this outcome. + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("trial", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("The trial associated with this outcome.")] + public Trial Trial { get { - return _family; + return _trial; } set { - _family = value; + _trial = value; } } /// - /// Minimum value of the distribution + /// Reports the choice made by the subject. True for right, False for left, None for no choice. /// - [Newtonsoft.Json.JsonPropertyAttribute("min")] - [System.ComponentModel.DescriptionAttribute("Minimum value of the distribution")] - public double Min + [Newtonsoft.Json.JsonPropertyAttribute("is_right_choice", Required=Newtonsoft.Json.Required.AllowNull)] + [System.ComponentModel.DescriptionAttribute("Reports the choice made by the subject. True for right, False for left, None for " + + "no choice.")] + public bool? IsRightChoice { get { - return _min; + return _isRightChoice; } set { - _min = value; + _isRightChoice = value; } } /// - /// Maximum value of the distribution + /// Indicates whether the subject received a reward on this trial. /// - [Newtonsoft.Json.JsonPropertyAttribute("max")] - [System.ComponentModel.DescriptionAttribute("Maximum value of the distribution")] - public double Max + [Newtonsoft.Json.JsonPropertyAttribute("is_rewarded", Required=Newtonsoft.Json.Required.Always)] + [System.ComponentModel.DescriptionAttribute("Indicates whether the subject received a reward on this trial.")] + public bool IsRewarded { get { - return _max; + return _isRewarded; } set { - _max = value; + _isRewarded = value; } } - public System.IObservable Generate() + public System.IObservable Generate() { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new UniformDistributionParameters(this))); + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TrialOutcome(this))); } - public System.IObservable Generate(System.IObservable source) + public System.IObservable Generate(System.IObservable source) { - return System.Reactive.Linq.Observable.Select(source, _ => new UniformDistributionParameters(this)); + return System.Reactive.Linq.Observable.Select(source, _ => new TrialOutcome(this)); } protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - stringBuilder.Append("Family = " + _family + ", "); - stringBuilder.Append("Min = " + _min + ", "); - stringBuilder.Append("Max = " + _max); + stringBuilder.Append("Trial = " + _trial + ", "); + stringBuilder.Append("IsRightChoice = " + _isRightChoice + ", "); + stringBuilder.Append("IsRewarded = " + _isRewarded); return true; } @@ -8488,7 +5424,7 @@ public partial class WarmupTrialGeneratorSpec : TrialGeneratorSpec private RewardProbabilityParameters _rewardProbabilityParameters; - private int _isBaiting; + private bool _isBaiting; private WarmupTrialGenerationEndConditions _trialGenerationEndParameters; @@ -8502,6 +5438,7 @@ public WarmupTrialGeneratorSpec() _minBlockReward = 1; _kernelSize = 2; _rewardProbabilityParameters = new RewardProbabilityParameters(); + _isBaiting = true; _trialGenerationEndParameters = new WarmupTrialGenerationEndConditions(); } @@ -8662,7 +5599,7 @@ public RewardProbabilityParameters RewardProbabilityParameters /// [Newtonsoft.Json.JsonPropertyAttribute("is_baiting")] [System.ComponentModel.DescriptionAttribute("Whether uncollected rewards carry over to the next trial.")] - public int IsBaiting + public bool IsBaiting { get { @@ -9337,94 +6274,6 @@ public enum BehaviorStabilityParametersBehaviorEvaluationMode } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class TruncationParameters2 - { - - public TruncationParameters2() - { - } - - protected TruncationParameters2(TruncationParameters2 other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new TruncationParameters2(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new TruncationParameters2(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class ScalingParameters2 - { - - public ScalingParameters2() - { - } - - protected ScalingParameters2(ScalingParameters2 other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new ScalingParameters2(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new ScalingParameters2(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] public enum SpinnakerCameraColorProcessing @@ -9438,19 +6287,6 @@ public enum SpinnakerCameraColorProcessing } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] - public enum TruncationParametersTruncationMode - { - - [System.Runtime.Serialization.EnumMemberAttribute(Value="exclude")] - Exclude = 0, - - [System.Runtime.Serialization.EnumMemberAttribute(Value="clamp")] - Clamp = 1, - } - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] public enum WaveformType @@ -9604,16 +6440,16 @@ private string GetSubtypeDiscriminator(System.Type objectType) [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] public partial class MatchDistribution : Bonsai.Expressions.SingleArgumentExpressionBuilder { @@ -9884,26 +6720,11 @@ public System.IObservable Process(System.IObservable(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -9914,26 +6735,6 @@ public System.IObservable Process(System.IObservable(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -9969,26 +6770,6 @@ public System.IObservable Process(System.IObservable(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -10019,56 +6800,11 @@ public System.IObservable Process(System.IObservable(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -10089,21 +6825,6 @@ public System.IObservable Process(System.IObservable sou return Process(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -10139,21 +6860,6 @@ public System.IObservable Process(System.IObservable sourc return Process(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -10208,16 +6914,6 @@ public System.IObservable Process(System.IObservable source) { return Process(source); } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } } @@ -10231,16 +6927,9 @@ public System.IObservable Process(System.IObservable [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] @@ -10248,33 +6937,17 @@ public System.IObservable Process(System.IObservable [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] @@ -10282,9 +6955,6 @@ public System.IObservable Process(System.IObservable [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] @@ -10296,8 +6966,6 @@ public System.IObservable Process(System.IObservable [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] public partial class DeserializeFromJson : Bonsai.Expressions.SingleArgumentExpressionBuilder { diff --git a/src/Extensions/Hardware.bonsai b/src/Extensions/Hardware.bonsai index f865501..83ea506 100644 --- a/src/Extensions/Hardware.bonsai +++ b/src/Extensions/Hardware.bonsai @@ -4,13 +4,11 @@ xmlns:harp="clr-namespace:Bonsai.Harp;assembly=Bonsai.Harp" xmlns:p1="clr-namespace:AllenNeuralDynamics.WhiteRabbit;assembly=AllenNeuralDynamics.WhiteRabbit" xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core" - xmlns:p2="clr-namespace:AindDynamicForagingDataSchema;assembly=Extensions" - xmlns:p3="clr-namespace:AllenNeuralDynamics.AindManipulator;assembly=AllenNeuralDynamics.AindManipulator" xmlns:beh="clr-namespace:Harp.Behavior;assembly=Harp.Behavior" xmlns:sys="clr-namespace:System;assembly=mscorlib" xmlns:cv="clr-namespace:Bonsai.Vision;assembly=Bonsai.Vision" - xmlns:p4="clr-namespace:OpenCV.Net;assembly=OpenCV.Net" - xmlns:p5="clr-namespace:AllenNeuralDynamics.Core;assembly=AllenNeuralDynamics.Core" + xmlns:p2="clr-namespace:OpenCV.Net;assembly=OpenCV.Net" + xmlns:p3="clr-namespace:AllenNeuralDynamics.Core;assembly=AllenNeuralDynamics.Core" xmlns:spk="clr-namespace:Bonsai.Spinnaker;assembly=Bonsai.Spinnaker" xmlns="https://bonsai-rx.org/2018/workflow"> @@ -136,14 +134,6 @@ Manipulator.Calibration - - - None - - - - - RigSchema @@ -238,26 +228,24 @@ - + - - - - + + + + - + - - - - + + + + - + - - - - + + @@ -411,7 +399,7 @@ - + RegionOfInterest 0 @@ -426,21 +414,21 @@ - + Default - 19000 - 0 - 1 - - Mono8 - - 0 - 0 - 0 - 0 - - + 19000 + 0 + 1 + + Mono8 + + 0 + 0 + 0 + 0 + + diff --git a/uv.lock b/uv.lock index 6b6b10e..6fbb981 100644 --- a/uv.lock +++ b/uv.lock @@ -72,7 +72,7 @@ docs = [ [package.metadata] requires-dist = [ - { name = "aind-behavior-services", specifier = ">=0.13.2" }, + { name = "aind-behavior-services", specifier = ">=0.13.5" }, { name = "contraqctor", marker = "extra == 'data'", specifier = ">=0.5.3" }, { name = "pydantic-settings" }, ] @@ -96,7 +96,7 @@ docs = [ [[package]] name = "aind-behavior-services" -version = "0.13.2" +version = "0.13.5" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "aind-behavior-curriculum" }, @@ -105,9 +105,9 @@ dependencies = [ { name = "pydantic" }, { name = "semver" }, ] -sdist = { url = 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true, "tools": { "bonsai.sgen": { - "version": "0.7.2", + "version": "0.9.0", "commands": [ "bonsai.sgen" ] diff --git a/src/Extensions/AindBehaviorDynamicForaging.Generated.cs b/src/Extensions/AindBehaviorDynamicForaging.Generated.cs index fcd83c6..5340e3f 100644 --- a/src/Extensions/AindBehaviorDynamicForaging.Generated.cs +++ b/src/Extensions/AindBehaviorDynamicForaging.Generated.cs @@ -9,7 +9,7 @@ namespace AindDynamicForagingDataSchema { #pragma warning disable // Disable all warnings - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class AindDynamicForagingRig @@ -407,7 +407,7 @@ public override string ToString() ///specification for the dynamic foraging behavioral experiment. ///It includes all task parameters, environment specifications, and control settings. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute(@"Main task logic model for the AIND Dynamic Foraging task. This is the top-level class that encapsulates the complete task logic @@ -569,7 +569,7 @@ public override string ToString() ///including environment structure, task mode settings, operation control, ///and numerical updaters for dynamic parameter modification. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute(@"Complete parameter specification for the AIND Dynamic Foraging task. This class contains all configurable parameters for the Dynamic Foraging task, @@ -706,7 +706,7 @@ public override string ToString() /// /// Represents an auditory secondary reinforcer. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Represents an auditory secondary reinforcer.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -769,7 +769,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class BaseModel @@ -816,7 +816,7 @@ public override string ToString() /// /// Parameters controlling when behavior is considered stable enough to switch blocks. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Parameters controlling when behavior is considered stable enough to switch blocks" + ".")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] @@ -930,7 +930,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class CameraControllerSpinnakerCamera @@ -1059,7 +1059,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class CameraControllerWebCamera @@ -1188,7 +1188,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class ConnectedClockOutput @@ -1277,7 +1277,7 @@ public override string ToString() /// /// Defines the conditions under which a foraging session should terminate. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Defines the conditions under which a foraging session should terminate.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -1433,21 +1433,21 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class CoupledTrialGeneratorSpec : TrialGeneratorSpec { - private Distribution _quiescentDuration; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _quiescentDuration; private double _responseDuration; private double _rewardConsumptionDuration; - private Distribution _interTrialIntervalDuration; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _interTrialIntervalDuration; - private Distribution _blockLen; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _blockLen; private int _minBlockReward; @@ -1465,11 +1465,11 @@ public partial class CoupledTrialGeneratorSpec : TrialGeneratorSpec public CoupledTrialGeneratorSpec() { - _quiescentDuration = new Distribution(); + _quiescentDuration = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); _responseDuration = 1D; _rewardConsumptionDuration = 3D; - _interTrialIntervalDuration = new Distribution(); - _blockLen = new Distribution(); + _interTrialIntervalDuration = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); + _blockLen = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); _minBlockReward = 1; _kernelSize = 2; _rewardProbabilityParameters = new RewardProbabilityParameters(); @@ -1503,7 +1503,7 @@ protected CoupledTrialGeneratorSpec(CoupledTrialGeneratorSpec other) : [Newtonsoft.Json.JsonPropertyAttribute("quiescent_duration")] [System.ComponentModel.DescriptionAttribute("Distribution describing the quiescence period before trial starts (in seconds). E" + "ach lick resets the timer.")] - public Distribution QuiescentDuration + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution QuiescentDuration { get { @@ -1555,7 +1555,7 @@ public double RewardConsumptionDuration [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("inter_trial_interval_duration")] [System.ComponentModel.DescriptionAttribute("Distribution describing the inter-trial interval (in seconds).")] - public Distribution InterTrialIntervalDuration + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution InterTrialIntervalDuration { get { @@ -1573,7 +1573,7 @@ public Distribution InterTrialIntervalDuration [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("block_len")] [System.ComponentModel.DescriptionAttribute("Distribution describing block length.")] - public Distribution BlockLen + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution BlockLen { get { @@ -1738,65 +1738,10 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "family")] - [JsonInheritanceAttribute("Scalar", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.Scalar))] - [JsonInheritanceAttribute("Beta", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.BetaDistribution))] - [JsonInheritanceAttribute("Binomial", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.BinomialDistribution))] - [JsonInheritanceAttribute("Exponential", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.ExponentialDistribution))] - [JsonInheritanceAttribute("Normal", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.NormalDistribution))] - [JsonInheritanceAttribute("LogNormal", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.LogNormalDistribution))] - [JsonInheritanceAttribute("Uniform", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.UniformDistribution))] - [JsonInheritanceAttribute("Poisson", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.PoissonDistribution))] - [JsonInheritanceAttribute("Gamma", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.GammaDistribution))] - [JsonInheritanceAttribute("Pdf", typeof(AllenNeuralDynamics.AindBehaviorServices.Distributions.PdfDistribution))] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class Distribution - { - - public Distribution() - { - } - - protected Distribution(Distribution other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new Distribution(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new Distribution(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - /// /// A calibrated sound card for the dynamic foraging rig. This is a subclass of the HarpSoundCard that includes the sound card calibration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("A calibrated sound card for the dynamic foraging rig. This is a subclass of the H" + "arpSoundCard that includes the sound card calibration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] @@ -1943,7 +1888,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class HarpBehavior @@ -2087,7 +2032,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class HarpEnvironmentSensor @@ -2231,7 +2176,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class HarpLicketySplit @@ -2375,7 +2320,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class HarpSniffDetector @@ -2519,7 +2464,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class HarpWhiteRabbit @@ -2686,7 +2631,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class IntegrationTestTrialGeneratorSpec : TrialGeneratorSpec @@ -2721,7 +2666,7 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) /// /// Input for water valve calibration class /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Input for water valve calibration class")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -2855,7 +2800,7 @@ public override string ToString() /// /// Represents a rectangle defined by its top-left corner, width, and height. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Represents a rectangle defined by its top-left corner, width, and height.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -2999,7 +2944,7 @@ public override string ToString() /// Family 2: [[1.0, 0.0], [0.9, 0.1], [0.8, 0.2], [0.7, 0.3], [0.6, 0.4], [0.5, 0.5]] /// Family 3: [[6, 1], [3, 1], [1, 1]] /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute(@"Defines the reward probability structure for a dynamic foraging task. Reward probabilities are defined as pairs (p_left, p_right) normalized by @@ -3099,7 +3044,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class RewardSize @@ -3180,7 +3125,7 @@ public override string ToString() /// /// Container class for calibration models. In a future release these will be moved to the respective devices /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Container class for calibration models. In a future release these will be moved t" + "o the respective devices")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] @@ -3272,7 +3217,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class Session @@ -3566,7 +3511,7 @@ public override string ToString() /// /// Calibration model for the sound card. Contains the waveforms to play for each cue. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Calibration model for the sound card. Contains the waveforms to play for each cue" + ".")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] @@ -3684,7 +3629,7 @@ public override string ToString() /// /// Spinnaker camera device configuration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Spinnaker camera device configuration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -3991,7 +3936,7 @@ public override string ToString() /// /// ADC bit depth options for Spinnaker cameras. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] public enum SpinnakerCameraAdcBitDepth { @@ -4009,7 +3954,7 @@ public enum SpinnakerCameraAdcBitDepth /// /// Pixel format options for Spinnaker cameras. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] public enum SpinnakerCameraPixelFormat { @@ -4450,7 +4395,7 @@ public enum SpinnakerCameraPixelFormat /// /// Represents a single trial that can be instantiated by the Bonsai state machine. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Represents a single trial that can be instantiated by the Bonsai state machine.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -4762,7 +4707,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class TrialGeneratorCompositeSpecTrialGeneratorSpec : TrialGeneratorSpec @@ -4822,7 +4767,7 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "type")] [JsonInheritanceAttribute("WarmupTrialGenerator", typeof(WarmupTrialGeneratorSpec))] [JsonInheritanceAttribute("CoupledTrialGenerator", typeof(CoupledTrialGeneratorSpec))] @@ -4874,7 +4819,7 @@ public override string ToString() /// /// Represents the outcome of a single trial. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Represents the outcome of a single trial.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -4988,7 +4933,7 @@ public override string ToString() /// /// FFMPEG video writer configuration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "video_writer_type")] [JsonInheritanceAttribute("FFMPEG", typeof(VideoWriterFfmpeg))] [JsonInheritanceAttribute("OPENCV", typeof(VideoWriterOpenCv))] @@ -5039,7 +4984,7 @@ public override string ToString() /// /// FFMPEG video writer configuration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("FFMPEG video writer configuration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -5167,7 +5112,7 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) /// /// OpenCV video writer configuration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("OpenCV video writer configuration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -5270,7 +5215,7 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class WarmupTrialGenerationEndConditions @@ -5402,21 +5347,21 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class WarmupTrialGeneratorSpec : TrialGeneratorSpec { - private Distribution _quiescentDuration; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _quiescentDuration; private double _responseDuration; private double _rewardConsumptionDuration; - private Distribution _interTrialIntervalDuration; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _interTrialIntervalDuration; - private Distribution _blockLen; + private AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution _blockLen; private int _minBlockReward; @@ -5430,11 +5375,11 @@ public partial class WarmupTrialGeneratorSpec : TrialGeneratorSpec public WarmupTrialGeneratorSpec() { - _quiescentDuration = new Distribution(); + _quiescentDuration = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); _responseDuration = 1D; _rewardConsumptionDuration = 3D; - _interTrialIntervalDuration = new Distribution(); - _blockLen = new Distribution(); + _interTrialIntervalDuration = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); + _blockLen = new AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution(); _minBlockReward = 1; _kernelSize = 2; _rewardProbabilityParameters = new RewardProbabilityParameters(); @@ -5464,7 +5409,7 @@ protected WarmupTrialGeneratorSpec(WarmupTrialGeneratorSpec other) : [Newtonsoft.Json.JsonPropertyAttribute("quiescent_duration")] [System.ComponentModel.DescriptionAttribute("Distribution describing the quiescence period before trial starts (in seconds). E" + "ach lick resets the timer.")] - public Distribution QuiescentDuration + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution QuiescentDuration { get { @@ -5516,7 +5461,7 @@ public double RewardConsumptionDuration [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("inter_trial_interval_duration")] [System.ComponentModel.DescriptionAttribute("Distribution describing the inter-trial interval (in seconds).")] - public Distribution InterTrialIntervalDuration + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution InterTrialIntervalDuration { get { @@ -5534,7 +5479,7 @@ public Distribution InterTrialIntervalDuration [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("block_len")] [System.ComponentModel.DescriptionAttribute("Distribution describing block length.")] - public Distribution BlockLen + public AllenNeuralDynamics.AindBehaviorServices.Distributions.Distribution BlockLen { get { @@ -5663,7 +5608,7 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) /// /// Represents a water valve calibration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Represents a water valve calibration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -5864,7 +5809,7 @@ public override string ToString() /// /// Model for a waveform to be played on the sound card. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Model for a waveform to be played on the sound card.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -5997,7 +5942,7 @@ public override string ToString() /// /// Web camera device configuration. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Web camera device configuration.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -6126,97 +6071,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "family")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class InterTrialIntervalDuration - { - - public InterTrialIntervalDuration() - { - } - - protected InterTrialIntervalDuration(InterTrialIntervalDuration other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new InterTrialIntervalDuration(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new InterTrialIntervalDuration(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "family")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] - [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockLen - { - - public BlockLen() - { - } - - protected BlockLen(BlockLen other) - { - } - - public System.IObservable Generate() - { - return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new BlockLen(this))); - } - - public System.IObservable Generate(System.IObservable source) - { - return System.Reactive.Linq.Observable.Select(source, _ => new BlockLen(this)); - } - - protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) - { - return false; - } - - public override string ToString() - { - System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); - stringBuilder.Append(GetType().Name); - stringBuilder.Append(" { "); - if (PrintMembers(stringBuilder)) - { - stringBuilder.Append(" "); - } - stringBuilder.Append("}"); - return stringBuilder.ToString(); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] @@ -6261,7 +6116,7 @@ public override string ToString() } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] public enum BehaviorStabilityParametersBehaviorEvaluationMode { @@ -6274,7 +6129,7 @@ public enum BehaviorStabilityParametersBehaviorEvaluationMode } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] public enum SpinnakerCameraColorProcessing { @@ -6287,7 +6142,7 @@ public enum SpinnakerCameraColorProcessing } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] public enum WaveformType { @@ -6437,56 +6292,7 @@ private string GetSubtypeDiscriminator(System.Type objectType) } } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DefaultPropertyAttribute("Type")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - public partial class MatchDistribution : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(Distribution); - return System.Linq.Expressions.Expression.Call( - typeof(MatchDistribution), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : Distribution - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] @@ -6529,7 +6335,7 @@ private static System.IObservable Process(System.IObservable))] @@ -6570,85 +6376,7 @@ private static System.IObservable Process(System.IObservable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(InterTrialIntervalDuration); - return System.Linq.Expressions.Expression.Call( - typeof(MatchInterTrialIntervalDuration), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : InterTrialIntervalDuration - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DefaultPropertyAttribute("Type")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] - public partial class MatchBlockLen : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(BlockLen); - return System.Linq.Expressions.Expression.Call( - typeof(MatchBlockLen), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : BlockLen - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] public partial class MatchAnonymous : Bonsai.Expressions.SingleArgumentExpressionBuilder @@ -6690,7 +6418,7 @@ private static System.IObservable Process(System.IObservable /// Serializes a sequence of data model objects into JSON strings. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Serializes a sequence of data model objects into JSON strings.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Transform)] [Bonsai.CombinatorAttribute()] @@ -6760,11 +6488,6 @@ public System.IObservable Process(System.IObservable(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -6900,16 +6623,6 @@ public System.IObservable Process(System.IObservable source) return Process(source); } - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - - public System.IObservable Process(System.IObservable source) - { - return Process(source); - } - public System.IObservable Process(System.IObservable source) { return Process(source); @@ -6920,7 +6633,7 @@ public System.IObservable Process(System.IObservable source) /// /// Deserializes a sequence of JSON strings into data model objects. /// - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.7.2.0 (Newtonsoft.Json v13.0.0.0)")] + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DescriptionAttribute("Deserializes a sequence of JSON strings into data model objects.")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Transform)] @@ -6935,7 +6648,6 @@ public System.IObservable Process(System.IObservable source) [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] @@ -6963,8 +6675,6 @@ public System.IObservable Process(System.IObservable source) [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] public partial class DeserializeFromJson : Bonsai.Expressions.SingleArgumentExpressionBuilder {