merge results from straglr

[tzhu-bio]

Thanks for the great tools.

Is there a way to merge the output results from multiple BAM files to help me quickly determine the copy number of TRs in each sample?

[readmanchiu]

Both the .tsv and .bed output file are amenable to bedtools which you can use to merge results from different samples. The -d options bedtools merge allow you to merge loci with a coordinate buffer and the -c 6 -o collapse allows you the list the copy numbers from the .bed outputs of different samples.