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Just a heads up, not sure if this affects other installs, but the bioconda container for the latest release throws the following when running straglr.py:
/usr/local/lib/python3.12/site-packages/src/ins.py:364: SyntaxWarning: invalid escape sequence '\d'
clipped_start_regex = re.compile('^(\d+)[S|H]')
/usr/local/lib/python3.12/site-packages/src/ins.py:365: SyntaxWarning: invalid escape sequence '\d'
clipped_end_regex = re.compile('(\d+)[S|H]$')
/usr/local/lib/python3.12/site-packages/src/tre.py:79: SyntaxWarning: invalid escape sequence '\d'
m = re.search('(\d[\d\s]*\d)', self.trf_args)
The container uses python version 3.12.11
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