Hello,
I ran the opal_workflow.py script from OPAL with the sourmash biobox from #10 and the cami_ii_mg configs from the OPAL repo, but in the end the @SampleID were off-by-one (for sample_0 in the config file it had @SampleID:1 in the all_results.profile file). Is seems like the gold standard is counting from 0 (matching the filename), should it be counting from 1 to match the opal_workflow.py output?
(I'm not sure if this is the right repo to post given that it was triggered by OPAL, but the @SampleID issue seems to come from the Utils.pm script in this repo)
Hello,
I ran the
opal_workflow.pyscript from OPAL with the sourmash biobox from #10 and thecami_ii_mgconfigs from the OPAL repo, but in the end the@SampleIDwere off-by-one (forsample_0in the config file it had@SampleID:1in theall_results.profilefile). Is seems like the gold standard is counting from 0 (matching the filename), should it be counting from 1 to match theopal_workflow.pyoutput?(I'm not sure if this is the right repo to post given that it was triggered by OPAL, but the
@SampleIDissue seems to come from theUtils.pmscript in this repo)