InVitroSystem.md

InVitroSystem

A biosample that is cultured, such as immortalized cell lines, organoids, gastruloids or samples that have been differentiated or reprogrammed.

Properties

Name	Type	Description	Notes
is_on_anvil	bool	Indicates whether the data object has been submitted to AnVIL.	[optional]
preview_timestamp	str	The date the object was previewed.	[optional]
release_timestamp	str	The date the object was released.	[optional]
publications	List[str]	The publications associated with this object.	[optional]
taxa	str	The species of the organism.	[optional]
url	str	An external resource with additional information.	[optional]
sources	List[str]	The originating lab(s) or vendor(s).	[optional]
lot_id	str	The lot identifier provided by the originating lab or vendor.	[optional]
product_id	str	The product identifier provided by the originating lab or vendor.	[optional]
documents	List[str]	Documents that provide additional information (not data file).	[optional]
lab	str	Lab associated with the submission.	[optional]
award	str	Grant associated with the submission.	[optional]
accession	str	A unique identifier to be used to reference the object prefixed with IGVF.	[optional]
alternate_accessions	List[str]	Accessions previously assigned to objects that have been merged with this object.	[optional]
collections	List[str]	Some samples are part of particular data collections.	[optional]
status	str	The status of the metadata object.	[optional]
revoke_detail	str	Explanation of why an object was transitioned to the revoked status.	[optional]
schema_version	str	The version of the JSON schema that the server uses to validate the object.	[optional]
uuid	str	The unique identifier associated with every object.	[optional]
notes	str	DACC internal notes.	[optional]
aliases	List[str]	Lab specific identifiers to reference an object.	[optional]
creation_timestamp	str	The date the object was created.	[optional]
submitted_by	str	The user who submitted the object.	[optional]
submitter_comment	str	Additional information specified by the submitter to be displayed as a comment on the portal.	[optional]
description	str	A plain text description of the object.	[optional]
annotated_from	str	Links to the sample that was used as a reference for annotating this sample.	[optional]
lower_bound_age	float	Lower bound of age of the organism at the time of collection of the sample.	[optional]
upper_bound_age	float	Upper bound of age of the organism at the time of collection of the sample.	[optional]
age_units	str	The units of time associated with age of the biosample.	[optional]
sample_terms	List[str]	Ontology terms identifying a biosample.	[optional]
disease_terms	List[str]	Ontology term of the disease associated with the biosample.	[optional]
pooled_from	List[str]	The biosamples this biosample is pooled from.	[optional]
originated_from	str	Links to a biosample that was originated from due to differentiation, dedifferentiation, reprogramming, or the introduction of a genetic modification.	[optional]
treatments	List[str]	A list of treatments applied to the biosample with the purpose of perturbation.	[optional]
donors	List[str]	Donor(s) the sample was derived from.	[optional]
biomarkers	List[str]	Biological markers that are associated with this sample.	[optional]
embryonic	bool	Biosample is embryonic.	[optional]
modifications	List[str]	Links to modifications applied to this biosample.	[optional]
cellular_sub_pool	str	Cellular sub-pool fraction of the sample. Also known as PKR and sub-library.	[optional]
starting_amount	float	The initial quantity of samples obtained.	[optional]
starting_amount_units	str	The units used to quantify the amount of samples obtained.	[optional]
dbxrefs	List[str]	Biosample identifiers from external resources, such as Biosample database or Cellosaurus.	[optional]
date_obtained	str	The date the sample was harvested, dissected or created, depending on the type of the sample.	[optional]
part_of	str	Links to a sample which represents a larger sample from which this sample was taken regardless of whether it is a tissue taken from an organism or smaller slices of a piece of tissue or aliquots of a cell growth.	[optional]
sorted_from	str	Links to a larger sample from which this sample was obtained through sorting.	[optional]
sorted_from_detail	str	Detail for sample sorted into fractions capturing information about sorting.	[optional]
virtual	bool	Virtual samples do not represent actual physical entities from experiments, but instead capture metadata about hypothetical or inferred samples relevant to reported analysis results, including those derived through demultiplexing.	[optional]
construct_library_sets	List[str]	The construct library sets of vectors introduced to this sample prior to performing an assay.	[optional]
moi	float	The actual multiplicity of infection (MOI) for vectors introduced to this sample. At least one construct library set must be specified in order to specify MOI. This property should capture the actual MOI, and not the targeted MOI.	[optional]
nucleic_acid_delivery	str	Method of introduction of nucleic acid into the cell.	[optional]
time_post_library_delivery	float	The time that elapsed past the time-point when the construct library sets were introduced.	[optional]
time_post_library_delivery_units	str	The units of time that elapsed past the point when the construct library sets were introduced.	[optional]
protocols	List[str]	Links to the protocol(s) for preparing the samples on Protocols.io.	[optional]
supersedes	List[str]	The sample(s) that this sample supersedes by virtue of being newer, better, or a fixed version of etc. than the one(s) it supersedes.	[optional]
selection_conditions	List[str]	The conditions used for selecting the sample.	[optional]
classifications	List[str]	The general category of this type of in vitro system.	[optional]
time_post_change	float	The time that elapsed past the time-point when the cell fate change treatments were introduced.	[optional]
time_post_change_units	str	The units of time that elapsed past the point when the cell fate change treatments were introduced.	[optional]
cell_fate_change_protocol	str	A protocol applied to the biosample with the purpose of differentiation, dedifferentiation, or reprogramming.	[optional]
demultiplexed_from	str	The biosample this in vitro system sample was demultiplexed from using computational methods.	[optional]
passage_number	int	Number of passages including the passages from the source.	[optional]
targeted_sample_term	str	Ontology term identifying the targeted endpoint biosample resulting from differentation or reprogramming.	[optional]
growth_medium	str	A growth medium of the in vitro system.	[optional]
biosample_qualifiers	List[str]	An array of various cell states. This property provides additional information about a cell at a finer-grained level compared to what ontologies currently capture. For example, exhausted T-cells.	[optional]
time_post_culture	float	The time that elapsed since the biosample was placed into culture.	[optional]
time_post_culture_units	str	The units of time that elapsed since the biosample was placed into culture.	[optional]
id	str		[optional]
type	List[str]		[optional]
summary	str	A summary of the sample.	[optional]
file_sets	List[str]	The file sets linked to this sample.	[optional]
multiplexed_in	List[str]	The multiplexed samples in which this sample is included.	[optional]
parts	List[str]	The parts into which this sample has been divided.	[optional]
sorted_fractions	List[str]	The fractions into which this sample has been sorted.	[optional]
origin_of	List[str]	The samples which originate from this sample, such as through a process of cell fate change or the introduction of a genetic material.	[optional]
institutional_certificates	List[str]	The institutional certificates under which use of this sample is approved.	[optional]
superseded_by	List[str]	Sample(s) this sample is superseded by virtue of those sample(s) being newer, better, or a fixed version of etc. than this one.	[optional]
sex	str		[optional]
age	str	Age of organism at the time of collection of the sample.	[optional]
upper_bound_age_in_hours	float	Upper bound of age of organism in hours at the time of collection of the sample.	[optional]
lower_bound_age_in_hours	float	Lower bound of age of organism in hours at the time of collection of the sample .	[optional]
pooled_in	List[str]	The pooled samples in which this sample is included.	[optional]
demultiplexed_to	List[str]	The in vitro system samples this in vitro system sample has been demultiplexed into.	[optional]

Example

from igvf_client.models.in_vitro_system import InVitroSystem

# TODO update the JSON string below
json = "{}"
# create an instance of InVitroSystem from a JSON string
in_vitro_system_instance = InVitroSystem.from_json(json)
# print the JSON string representation of the object
print(InVitroSystem.to_json())

# convert the object into a dict
in_vitro_system_dict = in_vitro_system_instance.to_dict()
# create an instance of InVitroSystem from a dict
in_vitro_system_from_dict = InVitroSystem.from_dict(in_vitro_system_dict)

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