diff --git a/src/incatools/odk/setup.py b/src/incatools/odk/setup.py index 410d3ba..867253a 100644 --- a/src/incatools/odk/setup.py +++ b/src/incatools/odk/setup.py @@ -24,7 +24,7 @@ SSSOM_SOURCE = "https://github.com/gouttegd/sssom-java/releases/download/sssom-java-1.10.0/sssom-cli-1.10.0.jar" DOSDP_SOURCE = "https://github.com/INCATools/dosdp-tools/releases/download/v0.19.3/dosdp-tools-0.19.3.tgz" RELGR_SOURCE = "https://github.com/INCATools/relation-graph/releases/download/v2.3.3/relation-graph-cli-2.3.3.tgz" -ODK_PLUGIN_SOURCE = "https://github.com/INCATools/odk-robot-plugin/releases/download/odk-robot-plugin-0.3.0/odk.jar" +ODK_PLUGIN_SOURCE = "https://github.com/INCATools/odk-robot-plugin/releases/download/odk-robot-plugin-0.3.1/odk.jar" SSSOM_PLUGIN_SOURCE = "https://github.com/gouttegd/sssom-java/releases/download/sssom-java-1.10.0/sssom-robot-plugin-1.10.0.jar" OBO_EPM_SOURCE = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/obo.epm.json" diff --git a/src/incatools/odk/templates/src/ontology/Makefile.jinja2 b/src/incatools/odk/templates/src/ontology/Makefile.jinja2 index 8b16aee..17db330 100644 --- a/src/incatools/odk/templates/src/ontology/Makefile.jinja2 +++ b/src/incatools/odk/templates/src/ontology/Makefile.jinja2 @@ -373,6 +373,7 @@ $(REPORTDIR)/$(SRC)-align-report.tsv: $(SRCMERGED) | $(REPORTDIR) all_robot_plug $(ROBOT) odk:check-align -i $< --reasoner $(REASONER) \ --upper-ontology-iri {{ project.robot.report.upper_ontology }} {%- if project.robot.report.use_base_iris %} \ + --detail BASE-ROOT \ {% if project.namespaces is not none %}{% for iri in project.namespaces %}--base-iri {{ iri }} \ {% endfor %}{% else %}--base-iri $(URIBASE)/{{ project.id.upper() }}_ --base-iri $(URIBASE)/{{ project.id }} \ {% endif %}{% else %} \ @@ -382,6 +383,7 @@ $(REPORTDIR)/%-align-report.tsv: % | $(REPORTDIR) all_robot_plugins $(ROBOT) odk:check-align -i $< --reasoner $(REASONER) \ --upper-ontology-iri {{ project.robot.report.upper_ontology }} {%- if project.robot.report.use_base_iris %} \ + --detail BASE-ROOT \ {% if project.namespaces is not none %}{% for iri in project.namespaces %}--base-iri {{ iri }} \ {% endfor %}{% else %}--base-iri $(URIBASE)/{{ project.id.upper() }}_ --base-iri $(URIBASE)/{{ project.id }} \ {% endif %}{% else %} \