From 65b1fe143f240dd12e9ec1718a52f5a444f7eb69 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Mon, 30 Mar 2026 09:01:18 -0700 Subject: [PATCH 1/3] Add initial ENERO registry entries --- src/semsql/builder/registry/ontologies.yaml | 13 ++++++ tests/test_builder/test_registry.py | 46 +++++++++++++++++++++ 2 files changed, 59 insertions(+) create mode 100644 tests/test_builder/test_registry.py diff --git a/src/semsql/builder/registry/ontologies.yaml b/src/semsql/builder/registry/ontologies.yaml index 34ed7fe..72774f4 100644 --- a/src/semsql/builder/registry/ontologies.yaml +++ b/src/semsql/builder/registry/ontologies.yaml @@ -196,6 +196,7 @@ ontologies: OMIMPS: https://omim.org/phenotypicSeries/PS mondo-ingest: url: https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/mondo-ingest.owl + # ENERO Foundry / Open Energy Family ontologies oeo: url: https://openenergyplatform.org/ontology/oeo/releases/oeo-full.owl prefixmap: @@ -205,6 +206,18 @@ ontologies: OEOX: https://openenergyplatform.org/ontology/oeo/OEOX_ MENO: https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO: http://www.ontologyrepository.com/CommonCoreOntologies/ + cepo: + url: https://raw.githubusercontent.com/OpenEnergyPlatform/ClimateEnergyPolicyOntology/production/src/ontology/cepo.owl + has_imports: true + prefixmap: + CEPO: http://purl.org/cepo/ontology#cepo_ + oto: + url: https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/oto.ttl + has_imports: true + format: turtle + build_command: "perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' $< > $@.tmp.ttl && robot merge -i $@.tmp.ttl -o $@ && rm $@.tmp.ttl" + prefixmap: + OTO: http://w3id.org/oto/OTO_ envthes: url: https://vocabs.lter-europe.net/rest/v1/envthes/data?format=text/turtle build_command: "robot query -i $< --update sparql/skos-to-owl.ru -o $@" diff --git a/tests/test_builder/test_registry.py b/tests/test_builder/test_registry.py new file mode 100644 index 0000000..0089adb --- /dev/null +++ b/tests/test_builder/test_registry.py @@ -0,0 +1,46 @@ +import re + +import pytest + +from semsql.builder import builder +from semsql.builder.registry import path_to_ontology_registry + + +@pytest.fixture(scope="module") +def registry_makefile() -> str: + return builder.compile_registry(str(path_to_ontology_registry())) + + +@pytest.mark.parametrize( + ("ontology_id", "url"), + [ + ( + "cepo", + "https://raw.githubusercontent.com/OpenEnergyPlatform/ClimateEnergyPolicyOntology/production/src/ontology/cepo.owl", + ), + ( + "oto", + "https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/oto.ttl", + ), + ], +) +def test_enero_download_rules_present(registry_makefile: str, ontology_id: str, url: str): + assert f"download/{ontology_id}.owl: STAMP" in registry_makefile + assert f"curl -L -s {url} > $@.tmp" in registry_makefile + + +@pytest.mark.parametrize( + ("ontology_id", "command"), + [ + ("cepo", r"robot merge -i \$< -o \$@"), + ( + "oto", + r"perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' \$< > \$@\.tmp\.ttl && robot merge -i \$@\.tmp\.ttl -o \$@ && rm \$@\.tmp\.ttl", + ), + ], +) +def test_enero_build_rules_present( + registry_makefile: str, ontology_id: str, command: str +): + pattern = rf"db/{ontology_id}\.owl: download/{ontology_id}\.owl\n\t{command}" + assert re.search(pattern, registry_makefile) From cc7d213ad57c8d7c7206600241a6b73b3825b2b7 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Mon, 30 Mar 2026 09:13:11 -0700 Subject: [PATCH 2/3] Document OTO workaround and refresh registry artifacts --- ontologies.Makefile | 24 ++++++++++++++++++- src/semsql/builder/prefixes/prefixes.csv | 2 ++ .../builder/prefixes/prefixes_local.csv | 2 ++ src/semsql/builder/registry/ontologies.yaml | 3 +++ tests/test_builder/test_registry.py | 6 +++++ 5 files changed, 36 insertions(+), 1 deletion(-) diff --git a/ontologies.Makefile b/ontologies.Makefile index 7885a6c..a6c5bcd 100644 --- a/ontologies.Makefile +++ b/ontologies.Makefile @@ -460,6 +460,28 @@ db/oeo.owl: download/oeo.owl cp $< $@ +download/cepo.owl: STAMP + curl -L -s https://raw.githubusercontent.com/OpenEnergyPlatform/ClimateEnergyPolicyOntology/production/src/ontology/cepo.owl > $@.tmp + sha256sum -b $@.tmp > $@.sha256 + mv $@.tmp $@ + +.PRECIOUS: download/cepo.owl + +db/cepo.owl: download/cepo.owl + robot merge -i $< -o $@ + + +download/oto.owl: STAMP + curl -L -s https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/oto.ttl > $@.tmp + sha256sum -b $@.tmp > $@.sha256 + mv $@.tmp $@ + +.PRECIOUS: download/oto.owl + +db/oto.owl: download/oto.owl + perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' $< > $@.tmp.ttl && robot merge -i $@.tmp.ttl -o $@ && rm $@.tmp.ttl + + download/envthes.owl: STAMP curl -L -s https://vocabs.lter-europe.net/rest/v1/envthes/data?format=text/turtle > $@.tmp sha256sum -b $@.tmp > $@.sha256 @@ -1658,4 +1680,4 @@ download/%.owl: STAMP db/%.owl: download/%.owl robot merge -i $< -o $@ -EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont sulo +EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo cepo oto envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont sulo diff --git a/src/semsql/builder/prefixes/prefixes.csv b/src/semsql/builder/prefixes/prefixes.csv index 4d34c7c..d85fead 100644 --- a/src/semsql/builder/prefixes/prefixes.csv +++ b/src/semsql/builder/prefixes/prefixes.csv @@ -117,6 +117,8 @@ OEO,https://openenergyplatform.org/ontology/oeo/OEO_ OEOX,https://openenergyplatform.org/ontology/oeo/OEOX_ MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO,http://www.ontologyrepository.com/CommonCoreOntologies/ +CEPO,http://purl.org/cepo/ontology#cepo_ +OTO,http://w3id.org/oto/OTO_ envthes,http://vocabs.lter-europe.net/EnvThes/ omv,http://omv.ontoware.org/2005/05/ iadopt,https://w3id.org/iadopt/ont/ diff --git a/src/semsql/builder/prefixes/prefixes_local.csv b/src/semsql/builder/prefixes/prefixes_local.csv index 2d95caa..2c07c9a 100644 --- a/src/semsql/builder/prefixes/prefixes_local.csv +++ b/src/semsql/builder/prefixes/prefixes_local.csv @@ -54,6 +54,8 @@ OEO,https://openenergyplatform.org/ontology/oeo/OEO_ OEOX,https://openenergyplatform.org/ontology/oeo/OEOX_ MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO,http://www.ontologyrepository.com/CommonCoreOntologies/ +CEPO,http://purl.org/cepo/ontology#cepo_ +OTO,http://w3id.org/oto/OTO_ envthes,http://vocabs.lter-europe.net/EnvThes/ omv,http://omv.ontoware.org/2005/05/ iadopt,https://w3id.org/iadopt/ont/ diff --git a/src/semsql/builder/registry/ontologies.yaml b/src/semsql/builder/registry/ontologies.yaml index 72774f4..dbd66d5 100644 --- a/src/semsql/builder/registry/ontologies.yaml +++ b/src/semsql/builder/registry/ontologies.yaml @@ -215,6 +215,9 @@ ontologies: url: https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/oto.ttl has_imports: true format: turtle + # Temporary workaround: the published import target `http://w3id.org/oto/develop/oto-shared.ttl` + # currently resolves to HTML docs instead of RDF/Turtle. + # Upstream issue: https://github.com/OpenEnergyPlatform/OpenTransportOntology/issues/46 build_command: "perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' $< > $@.tmp.ttl && robot merge -i $@.tmp.ttl -o $@ && rm $@.tmp.ttl" prefixmap: OTO: http://w3id.org/oto/OTO_ diff --git a/tests/test_builder/test_registry.py b/tests/test_builder/test_registry.py index 0089adb..264c4b1 100644 --- a/tests/test_builder/test_registry.py +++ b/tests/test_builder/test_registry.py @@ -1,3 +1,9 @@ +"""Registry compilation tests. + +These tests only verify that ontology registry entries compile into the expected +download/build rules. They are not end-to-end ontology build tests. +""" + import re import pytest From 3cc0e032fae5dba51593d6a8f283f422064c5422 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Mon, 30 Mar 2026 10:08:19 -0700 Subject: [PATCH 3/3] Add MENO and MUNO registry entries --- ontologies.Makefile | 24 ++++++++++++++++++- src/semsql/builder/prefixes/prefixes.csv | 3 ++- .../builder/prefixes/prefixes_local.csv | 3 ++- src/semsql/builder/registry/ontologies.yaml | 16 ++++++++++++- tests/test_builder/test_registry.py | 13 ++++++++++ 5 files changed, 55 insertions(+), 4 deletions(-) diff --git a/ontologies.Makefile b/ontologies.Makefile index a6c5bcd..027c51d 100644 --- a/ontologies.Makefile +++ b/ontologies.Makefile @@ -482,6 +482,28 @@ db/oto.owl: download/oto.owl perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' $< > $@.tmp.ttl && robot merge -i $@.tmp.ttl -o $@ && rm $@.tmp.ttl +download/meno.owl: STAMP + curl -L -s https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl > $@.tmp + sha256sum -b $@.tmp > $@.sha256 + mv $@.tmp $@ + +.PRECIOUS: download/meno.owl + +db/meno.owl: download/meno.owl + robot merge -i $< -o $@ + + +download/muno.owl: STAMP + curl -L -s https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl > $@.tmp + sha256sum -b $@.tmp > $@.sha256 + mv $@.tmp $@ + +.PRECIOUS: download/muno.owl + +db/muno.owl: download/muno.owl + perl -0pe 's@http://www.semanticweb.org/abc/ontologies/2025/2/untitled-ontology-46/@https://raw.githubusercontent.com/stap-m/muno/main/src/ro-extracted.owl@g; s@http://www.semanticweb.org/abc/ontologies/2025/2/untitled-ontology-47/@https://raw.githubusercontent.com/stap-m/muno/main/src/iao-extracted.owl@g' $< > $@.tmp.owl && robot merge -i $@.tmp.owl -o $@ && rm $@.tmp.owl + + download/envthes.owl: STAMP curl -L -s https://vocabs.lter-europe.net/rest/v1/envthes/data?format=text/turtle > $@.tmp sha256sum -b $@.tmp > $@.sha256 @@ -1680,4 +1702,4 @@ download/%.owl: STAMP db/%.owl: download/%.owl robot merge -i $< -o $@ -EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo cepo oto envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont sulo +EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo cepo oto meno muno envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont sulo diff --git a/src/semsql/builder/prefixes/prefixes.csv b/src/semsql/builder/prefixes/prefixes.csv index d85fead..3d82e7b 100644 --- a/src/semsql/builder/prefixes/prefixes.csv +++ b/src/semsql/builder/prefixes/prefixes.csv @@ -115,10 +115,11 @@ OMIM,https://omim.org/entry/ OMIMPS,https://omim.org/phenotypicSeries/PS OEO,https://openenergyplatform.org/ontology/oeo/OEO_ OEOX,https://openenergyplatform.org/ontology/oeo/OEOX_ -MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO,http://www.ontologyrepository.com/CommonCoreOntologies/ CEPO,http://purl.org/cepo/ontology#cepo_ OTO,http://w3id.org/oto/OTO_ +MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ +MUNO,https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl/MUNO_ envthes,http://vocabs.lter-europe.net/EnvThes/ omv,http://omv.ontoware.org/2005/05/ iadopt,https://w3id.org/iadopt/ont/ diff --git a/src/semsql/builder/prefixes/prefixes_local.csv b/src/semsql/builder/prefixes/prefixes_local.csv index 2c07c9a..30db8ba 100644 --- a/src/semsql/builder/prefixes/prefixes_local.csv +++ b/src/semsql/builder/prefixes/prefixes_local.csv @@ -52,10 +52,11 @@ OMIM,https://omim.org/entry/ OMIMPS,https://omim.org/phenotypicSeries/PS OEO,https://openenergyplatform.org/ontology/oeo/OEO_ OEOX,https://openenergyplatform.org/ontology/oeo/OEOX_ -MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO,http://www.ontologyrepository.com/CommonCoreOntologies/ CEPO,http://purl.org/cepo/ontology#cepo_ OTO,http://w3id.org/oto/OTO_ +MENO,https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ +MUNO,https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl/MUNO_ envthes,http://vocabs.lter-europe.net/EnvThes/ omv,http://omv.ontoware.org/2005/05/ iadopt,https://w3id.org/iadopt/ont/ diff --git a/src/semsql/builder/registry/ontologies.yaml b/src/semsql/builder/registry/ontologies.yaml index dbd66d5..5e2b228 100644 --- a/src/semsql/builder/registry/ontologies.yaml +++ b/src/semsql/builder/registry/ontologies.yaml @@ -204,7 +204,6 @@ ontologies: # https://github.com/OpenEnergyPlatform/ontology/pull/2050 OEO: https://openenergyplatform.org/ontology/oeo/OEO_ OEOX: https://openenergyplatform.org/ontology/oeo/OEOX_ - MENO: https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ OEO.CCO: http://www.ontologyrepository.com/CommonCoreOntologies/ cepo: url: https://raw.githubusercontent.com/OpenEnergyPlatform/ClimateEnergyPolicyOntology/production/src/ontology/cepo.owl @@ -221,6 +220,21 @@ ontologies: build_command: "perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' $< > $@.tmp.ttl && robot merge -i $@.tmp.ttl -o $@ && rm $@.tmp.ttl" prefixmap: OTO: http://w3id.org/oto/OTO_ + meno: + url: https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl + has_imports: true + prefixmap: + MENO: https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl/MENO_ + muno: + url: https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl + has_imports: true + # Temporary workaround: the published OWL imports two placeholder + # `semanticweb.org/.../untitled-ontology-*` IRIs that are only resolved via + # the repo-local Protégé catalog. Rewrite them to the raw extracted imports. + # Upstream issue: https://github.com/stap-m/muno/issues/6 + build_command: "perl -0pe 's@http://www.semanticweb.org/abc/ontologies/2025/2/untitled-ontology-46/@https://raw.githubusercontent.com/stap-m/muno/main/src/ro-extracted.owl@g; s@http://www.semanticweb.org/abc/ontologies/2025/2/untitled-ontology-47/@https://raw.githubusercontent.com/stap-m/muno/main/src/iao-extracted.owl@g' $< > $@.tmp.owl && robot merge -i $@.tmp.owl -o $@ && rm $@.tmp.owl" + prefixmap: + MUNO: https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl/MUNO_ envthes: url: https://vocabs.lter-europe.net/rest/v1/envthes/data?format=text/turtle build_command: "robot query -i $< --update sparql/skos-to-owl.ru -o $@" diff --git a/tests/test_builder/test_registry.py b/tests/test_builder/test_registry.py index 264c4b1..31e42b1 100644 --- a/tests/test_builder/test_registry.py +++ b/tests/test_builder/test_registry.py @@ -24,6 +24,14 @@ def registry_makefile() -> str: "cepo", "https://raw.githubusercontent.com/OpenEnergyPlatform/ClimateEnergyPolicyOntology/production/src/ontology/cepo.owl", ), + ( + "meno", + "https://raw.githubusercontent.com/stap-m/midlevel-energy-ontology/main/ontology/src/midlevel-energy.owl", + ), + ( + "muno", + "https://raw.githubusercontent.com/stap-m/muno/main/src/muno.owl", + ), ( "oto", "https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/oto.ttl", @@ -39,6 +47,11 @@ def test_enero_download_rules_present(registry_makefile: str, ontology_id: str, ("ontology_id", "command"), [ ("cepo", r"robot merge -i \$< -o \$@"), + ("meno", r"robot merge -i \$< -o \$@"), + ( + "muno", + r"perl -0pe 's@http://www\.semanticweb\.org/abc/ontologies/2025/2/untitled-ontology-46/@https://raw\.githubusercontent\.com/stap-m/muno/main/src/ro-extracted\.owl@g; s@http://www\.semanticweb\.org/abc/ontologies/2025/2/untitled-ontology-47/@https://raw\.githubusercontent\.com/stap-m/muno/main/src/iao-extracted\.owl@g' \$< > \$@\.tmp\.owl && robot merge -i \$@\.tmp\.owl -o \$@ && rm \$@\.tmp\.owl", + ), ( "oto", r"perl -0pe 's@http://w3id.org/oto/develop/oto-shared.ttl@https://raw.githubusercontent.com/OpenEnergyPlatform/OpenTransportOntology/production/src/ontology/edits/oto-shared.ttl@g' \$< > \$@\.tmp\.ttl && robot merge -i \$@\.tmp\.ttl -o \$@ && rm \$@\.tmp\.ttl",