Notices

[raufs]

• Mar. 4, 2026: Issues with cgcg due to gravis, library for creating graphical networks, needing earlier setuptools version. It should be resolved in the next zol build (sometime this week hopefully), but a quick solution is to just downgrade setuptools:

# with the zol conda environment activated
pip install setuptools==77.0.3

• Sep. 24, 2025: In v1.6.9 - minimal database downloading results in issues in zol - please download the full set of databases or use the -ld option when setting up databases using setup_annotation_dbs.py. Also if using cgc, please provide a / at the end of the output directory, this causes issues if running it via Docker. Both issues will be patched in the next release.
  • Update: These issues are now resolved in v1.6.10