CESM Build failing with "Name in only-list"

[connorourke]

I am running the case.build from CESM for a test case and running into an issue with the compiling of pio:

/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90(84): error #6580: Name in only-list does not exist or is not accessible.   [PIO_DEF_VAR_ZSTANDARD]
       PIO_def_var_zstandard, &
-------^
/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90(90): error #6580: Name in only-list does not exist or is not accessible.   [PIO_INQ_VAR_FILTER_IDS]
       PIO_inq_var_filter_ids   , &
-------^
/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90(91): error #6580: Name in only-list does not exist or is not accessible.   [PIO_INQ_VAR_FILTER_INFO]
       PIO_inq_var_filter_info  , &
-------^
/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90(92): error #6580: Name in only-list does not exist or is not accessible.   [PIO_INQ_FILTER_AVAIL]
       PIO_inq_filter_avail     , &
-------^
/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90(93): error #6580: Name in only-list does not exist or is not accessible.   [PIO_DEF_VAR_SZIP]
       PIO_def_var_szip, &
-------^

from:

[ 97%] Building Fortran object src/flib/CMakeFiles/piof.dir/pio.F90.o
cd /scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/pio/pio2/src/flib && /iridisfs/i6software/openmpi/5.0.7/intel_classic/bin/mpif90 -DCPRINTEL -DLINUX -DTIMING -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/pio/pio2 -I/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/pio/pio2/src/flib -I/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include -I/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/clib -I/scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/clib/../ncint -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/include -I/iridisfs/i6software/netcdf/C/4.9.3_consistent/install/include -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source    -O2 -debug minimal  -DTIMING -DLINUX  -DCESMCOUPLED   -DFORTRANUNDERSCORE -DCPRINTEL -DNETCDF_ENABLE_LEGACY_MACROS -DNDEBUG -DHAVE_MPI -DMCT_INTERFACE -DHAVE_SLASHPROC -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -DMED_PRESENT  -I. -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/include -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/finclude -I/iridisfs/i6software/netcdf/C/4.9.3_consistent/install/include -I/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include -I/scratch/co1f23/CESM_OUTPUTS/TEST_MINIMAL/bld/intel/openmpi/nodebug/nothreads/mct/include -debug minimal -fPIC -c /scratch/co1f23/CESM/cesm.2.2.0/cime/src/externals/pio2/src/flib/pio.F90 -o CMakeFiles/piof.dir/pio.F90.o

The pio lib is tagged as:

cime5.8.32.9

nc-config --all:

This netCDF 4.9.3 has been built with the following features: 

  --cc               -> /iridisfs/i6software/intel/classic/install/compiler/2022.2.0/linux/bin/intel64/icc
  --cflags           -> -I/iridisfs/i6software/netcdf/C/4.9.3_consistent/install/include
  --libs             -> -L/iridisfs/i6software/netcdf/C/4.9.3_consistent/install/lib64 -lnetcdf
  --static           -> -lHDF5::HDF5 -lhdf5::hdf5_hl -lm -lz -lzstd -lbz2 -lCURL::libcurl -lxml2


  --has-dap          -> yes
  --has-dap2         -> yes
  --has-dap4         -> yes
  --has-nc2          -> yes
  --has-nc4          -> yes
  --has-hdf5         -> yes
  --has-hdf4         -> no
  --has-logging      -> no
  --has-pnetcdf      -> no
  --has-szlib        -> yes
  --has-cdf5         -> yes
  --has-parallel4    -> yes
  --has-parallel     -> yes
  --has-nczarr       -> yes
  --has-zstd         -> yes
  --has-benchmarks   -> yes
  --has-multifilters -> yes
  --has-stdfilters   -> deflate zstd bz2
  --has-quantize     -> yes

  --prefix            -> /iridisfs/i6software/netcdf/C/4.9.3_consistent/install
  --includedir        -> /iridisfs/i6software/netcdf/C/4.9.3_consistent/install/include
  --libdir            -> /iridisfs/i6software/netcdf/C/4.9.3_consistent/install/lib64
  --plugindir         -> /iridisfs/i6software/netcdf/C/4.9.3_consistent/install/hdf5/lib/plugin
  --plugin-searchpath -> /iridisfs/i6software/netcdf/C/4.9.3_consistent/install/hdf5/lib/plugin:/usr/local/hdf5/lib/plugin
  --version           -> netCDF 4.9.3
  --build-system      -> cmake

and nf-config --all:

This  4.6.2 has been built with the following features: 

  --cc        -> /iridisfs/i6software/intel/classic/install/compiler/2022.2.0/linux/bin/intel64/icc
  --cflags    -> -I/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include  -O2 

  --fc        -> /iridisfs/i6software/intel/classic/install/compiler/2022.2.0/linux/bin/intel64/ifort
  --fflags    -> -I/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include -I/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include
  --flibs     -> -L/iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/lib64 -lnetcdff -lnetcdf  
  --has-f90   -> TRUE
  --has-f03   -> yes

  --has-nc2   -> yes
  --has-nc4   -> yes

  --prefix    -> /iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install
  --includedir-> /iridisfs/i6software/netcdf/Fortran/4.6.2_consistent/install/include
  --version   ->  4.6.2

Any suggestions on a fix to get it to compile would be appreciated.

[jedwards4b]

The version of parallelio that supports netcdf-4.9.3 is parallelio-2.6.8
But it may be easier to provide netcdf-4.9.2 than to update parallelio in cesm2.2.0.