From 01a878c07d5a7bb276ee63c0939d5172295ac249 Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 15:39:52 +0100
Subject: [PATCH 01/10] OP#9364: Preserve PEP 508 markers and support optional
 dependencies

This commit fixes two critical issues:

1. Platform-Specific Dependencies: Platform markers (e.g., sys_platform)
   are now preserved in the serialized output instead of being stripped.
   This prevents pip conflict errors when multiple platform-specific
   versions of the same package exist (e.g., numpy==2.1.1 for Linux/macOS
   and numpy==1.26.4 for Windows).

2. Optional Dependencies: Added --optional-extras argument to include
   packages from [project.optional-dependencies] in type checking. This
   is essential for projects that unconditionally import packages defined
   as optional extras.

Changes:
- Add packaging>=24.0 dependency for PEP 508 requirement parsing
- Add marker property to Package abstract class and implementations
- Create parse_requirement_with_marker() function using packaging.requirements
- Update Package.__hash__() and __eq__() to include marker
- Add parse_optional_dependencies() to parse specified extras
- Add get_extra_index_urls() to auto-detect extra index URLs from uv config
- Update parse_pyproject_toml() to accept optional_extras parameter
- Add --optional-extras CLI argument to main()
- Update all package creation functions to accept marker parameter
- Add comprehensive tests for marker preservation and optional deps
- Update README with usage examples

Breaking Changes: None (backward compatible)
Version Bump: 0.1.0 -> 0.2.0 (minor)
---
 README.md                                     |  53 +++++
 pyproject.toml                                |   1 +
 .../update_mypy_dependencies.py               | 220 ++++++++++++++++--
 tests/test_markers_and_optional_deps.py       | 167 +++++++++++++
 4 files changed, 418 insertions(+), 23 deletions(-)
 create mode 100644 tests/test_markers_and_optional_deps.py

diff --git a/README.md b/README.md
index 7983cc5..3663b44 100644
--- a/README.md
+++ b/README.md
@@ -47,6 +47,59 @@ Or run the script directly:
 python update_mypy_dependencies.py
 ```
 
+### Including Optional Dependencies
+
+If your project has optional dependencies that are required for type checking, you can specify which extras to include:
+
+```yaml
+- repo: https://github.com/OpenTrafficCam/dependency-update-pre-commit
+  rev: v0.1.0
+  hooks:
+    - id: update-mypy-dependencies
+      args: ['--optional-extras=inference_cpu']
+```
+
+For multiple extras:
+
+```yaml
+args: ['--optional-extras=inference_cpu,test_extras']
+```
+
+**Example Use Case:**
+
+If your `pyproject.toml` has:
+
+```toml
+[project.optional-dependencies]
+inference_cpu = [
+    "torch==2.7.1",
+    "torchvision==0.22.1",
+]
+```
+
+And your code unconditionally imports torch, adding `--optional-extras=inference_cpu` ensures these packages are available for mypy type checking.
+
+### Platform-Specific Dependencies
+
+The hook now preserves PEP 508 environment markers, allowing platform-specific dependencies to work correctly:
+
+**Input (pyproject.toml):**
+```toml
+dependencies = [
+    "numpy==2.1.1; sys_platform != 'win32'",
+    "numpy==1.26.4; sys_platform == 'win32'",
+]
+```
+
+**Output (.pre-commit-config.yaml):**
+```yaml
+additional_dependencies:
+  - numpy==1.26.4; sys_platform == "win32"
+  - numpy==2.1.1; sys_platform != "win32"
+```
+
+Pip will automatically evaluate the markers and install only the matching version for your platform.
+
 ## Dependency Sources
 
 ### pyproject.toml (Preferred)
diff --git a/pyproject.toml b/pyproject.toml
index c439b25..584eeed 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,6 +26,7 @@ keywords = ["pre-commit", "mypy", "type-stubs", "type-checking"]
 dependencies = [
     "PyYAML>=6.0",
     "requests>=2.31.0",
+    "packaging>=24.0",
 ]
 
 [project.scripts]
diff --git a/src/dependency_update_pre_commit/update_mypy_dependencies.py b/src/dependency_update_pre_commit/update_mypy_dependencies.py
index 7a64bae..04ee452 100755
--- a/src/dependency_update_pre_commit/update_mypy_dependencies.py
+++ b/src/dependency_update_pre_commit/update_mypy_dependencies.py
@@ -10,6 +10,7 @@
 
 import requests
 import yaml
+from packaging.requirements import Requirement
 
 REPOSITORIES = "repos"
 REPOSITORY = "repo"
@@ -47,13 +48,19 @@ def name(self) -> str:
     def version(self) -> str | None:
         raise NotImplementedError
 
+    @property
+    @abstractmethod
+    def marker(self) -> str | None:
+        raise NotImplementedError
+
     def __hash__(self) -> int:
-        return hash((self.name, self.version))
+        # Include marker in hash so platform-specific versions are distinct
+        return hash((self.name, self.version, self.marker))
 
     def __eq__(self, other: object) -> bool:
         if not isinstance(other, Package):
             return False
-        return (self.name, self.version) == (other.name, other.version)
+        return (self.name, self.version, self.marker) == (other.name, other.version, other.marker)
 
 
 class TypeStubPackage(Package):
@@ -65,12 +72,20 @@ def name(self) -> str:
     def version(self) -> str | None:
         return self._version
 
-    def __init__(self, name: str, version: str | None) -> None:
+    @property
+    def marker(self) -> str | None:
+        return self._marker
+
+    def __init__(self, name: str, version: str | None, marker: str | None = None) -> None:
         self._name = name
         self._version = version
+        self._marker = marker
 
     def serialize(self) -> str:
-        return self.name
+        result = self.name
+        if self.marker:
+            result += f"; {self.marker}"
+        return result
 
 
 class NormalPackage(Package):
@@ -82,14 +97,22 @@ def name(self) -> str:
     def version(self) -> str | None:
         return self._version
 
-    def __init__(self, name: str, version: str | None) -> None:
+    @property
+    def marker(self) -> str | None:
+        return self._marker
+
+    def __init__(self, name: str, version: str | None, marker: str | None = None) -> None:
         self._name = name
         self._version = version
+        self._marker = marker
 
     def serialize(self) -> str:
+        result = self.name
         if self.version:
-            return self.name + "==" + self.version
-        return self.name
+            result += "==" + self.version
+        if self.marker:
+            result += f"; {self.marker}"
+        return result
 
 
 @dataclass
@@ -132,8 +155,55 @@ def parse_multiple_requirements_file(
     return packages
 
 
-def parse_pyproject_toml(pyproject_file: Path) -> set[AdditionalMypyDependency]:
-    """Parse pyproject.toml and extract package names from dependencies."""
+def parse_requirement_with_marker(requirement_line: str) -> AdditionalMypyDependency | None:
+    """Parse requirement preserving environment marker.
+
+    Args:
+        requirement_line: PEP 508 requirement string (e.g., 'numpy==2.1.1; sys_platform != "win32"')
+
+    Returns:
+        Package or ExtraIndexUrl object, or None if parsing fails
+    """
+    # Handle extra-index-url separately
+    if match_extra_index_url := pattern_extra_index_url.match(requirement_line):
+        return create_extra_index_url(
+            match_extra_index_url.group(CAPTURE_GROUP_URL).strip()
+        )
+
+    try:
+        # Parse as full PEP 508 requirement with potential marker
+        req = Requirement(requirement_line)
+        package_name = req.name
+
+        # Extract version if specified (assumes == operator)
+        version = None
+        if req.specifier:
+            for spec in req.specifier:
+                if spec.operator == "==":
+                    version = spec.version
+                    break
+
+        # Preserve marker as string
+        marker = str(req.marker) if req.marker else None
+
+        return create_package(name=package_name, version=version, marker=marker)
+    except Exception:
+        # Fallback: use original regex-based parsing without marker
+        return parse_requirement(requirement_line)
+
+
+def parse_pyproject_toml(
+    pyproject_file: Path, optional_extras: list[str] | None = None
+) -> set[AdditionalMypyDependency]:
+    """Parse pyproject.toml and extract package names from dependencies.
+
+    Args:
+        pyproject_file: Path to pyproject.toml
+        optional_extras: List of optional extras to include (e.g., ['inference_cpu'])
+
+    Returns:
+        Set of packages to include in mypy's additional_dependencies
+    """
     if not pyproject_file.exists():
         return set()
 
@@ -145,10 +215,8 @@ def parse_pyproject_toml(pyproject_file: Path) -> set[AdditionalMypyDependency]:
     # Extract from [project.dependencies]
     if "project" in pyproject_data and "dependencies" in pyproject_data["project"]:
         for dependency in pyproject_data["project"]["dependencies"]:
-            # Handle platform-specific dependencies like
-            # 'pywin32==310; sys_platform == "win32"'
-            dependency = dependency.split(";")[0].strip()
-            package = parse_requirement(dependency)
+            # CHANGED: Use new parser that preserves markers
+            package = parse_requirement_with_marker(dependency)
             if package:
                 packages.add(package)
 
@@ -158,11 +226,99 @@ def parse_pyproject_toml(pyproject_file: Path) -> set[AdditionalMypyDependency]:
         and "dev" in pyproject_data["dependency-groups"]
     ):
         for dependency in pyproject_data["dependency-groups"]["dev"]:
-            dependency = dependency.split(";")[0].strip()
-            package = parse_requirement(dependency)
+            # CHANGED: Use new parser that preserves markers
+            package = parse_requirement_with_marker(dependency)
+            if package:
+                packages.add(package)
+
+    # NEW: Extract from [project.optional-dependencies] if specified
+    if optional_extras:
+        optional_packages = parse_optional_dependencies(pyproject_data, optional_extras)
+        packages.update(optional_packages)
+
+    return packages
+
+
+def get_extra_index_urls(pyproject_data: dict, extra_names: list[str]) -> set[ExtraIndexUrl]:
+    """Extract extra index URLs for specified optional extras from pyproject.toml.
+
+    Args:
+        pyproject_data: Parsed pyproject.toml data
+        extra_names: List of extra names (e.g., ['inference_cpu'])
+
+    Returns:
+        Set of ExtraIndexUrl objects
+    """
+    index_urls = set()
+
+    # Get [tool.uv.sources] if it exists (uv-specific config)
+    sources = pyproject_data.get("tool", {}).get("uv", {}).get("sources", {})
+
+    # Get [tool.uv.index] if it exists
+    indexes = pyproject_data.get("tool", {}).get("uv", {}).get("index", [])
+    index_map = {idx.get("name"): idx.get("url") for idx in indexes}
+
+    # Check if any dependencies in the extras reference special indexes
+    # This is a heuristic - if package sources reference an index, include that index
+    optional_deps = pyproject_data.get("project", {}).get("optional-dependencies", {})
+
+    for extra_name in extra_names:
+        if extra_name not in optional_deps:
+            continue
+
+        # Get package names from this extra
+        for dep in optional_deps[extra_name]:
+            package_name = dep.split(";")[0].split("=")[0].split("<")[0].split(">")[0].strip()
+
+            # Check if this package has a custom source
+            if package_name in sources:
+                source_config = sources[package_name]
+                # Handle list of sources
+                if isinstance(source_config, list):
+                    for src in source_config:
+                        if "index" in src:
+                            index_name = src["index"]
+                            if index_name in index_map:
+                                index_urls.add(ExtraIndexUrl(index_map[index_name]))
+                # Handle single source
+                elif isinstance(source_config, dict) and "index" in source_config:
+                    index_name = source_config["index"]
+                    if index_name in index_map:
+                        index_urls.add(ExtraIndexUrl(index_map[index_name]))
+
+    return index_urls
+
+
+def parse_optional_dependencies(
+    pyproject_data: dict, extra_names: list[str]
+) -> set[AdditionalMypyDependency]:
+    """Parse specified optional-dependencies extras from pyproject.toml.
+
+    Args:
+        pyproject_data: Parsed pyproject.toml data
+        extra_names: List of extra names to include (e.g., ['inference_cpu'])
+
+    Returns:
+        Set of packages and extra index URLs from the specified extras
+    """
+    packages = set()
+
+    optional_deps = pyproject_data.get("project", {}).get("optional-dependencies", {})
+
+    for extra_name in extra_names:
+        if extra_name not in optional_deps:
+            print(f"Warning: Optional extra '{extra_name}' not found in [project.optional-dependencies]")
+            continue
+
+        for dependency in optional_deps[extra_name]:
+            package = parse_requirement_with_marker(dependency)
             if package:
                 packages.add(package)
 
+    # Add extra index URLs if needed
+    index_urls = get_extra_index_urls(pyproject_data, extra_names)
+    packages.update(index_urls)
+
     return packages
 
 
@@ -215,15 +371,15 @@ def create_extra_index_url(url: str) -> AdditionalMypyDependency:
     return ExtraIndexUrl(url)
 
 
-def create_package(name: str, version: str | None) -> AdditionalMypyDependency:
+def create_package(name: str, version: str | None, marker: str | None = None) -> AdditionalMypyDependency:
     """Check if a type stub exists for a given package name and return it."""
     types_package_name = f"types-{name}"
     if __check_types_for_package_exists(types_package_name):
-        return create_type_stub_package(name=types_package_name, version=version)
+        return create_type_stub_package(name=types_package_name, version=version, marker=marker)
 
     # Some packages already provide type stubs with their package
     # If they don't pre-commit mypy won't fail
-    return create_normal_package(name=name, version=version)
+    return create_normal_package(name=name, version=version, marker=marker)
 
 
 def __check_types_for_package_exists(package_name: str) -> bool:
@@ -232,13 +388,13 @@ def __check_types_for_package_exists(package_name: str) -> bool:
 
 
 def create_type_stub_package(
-    name: str, version: str | None
+    name: str, version: str | None, marker: str | None = None
 ) -> AdditionalMypyDependency:
-    return TypeStubPackage(name=name, version=version)
+    return TypeStubPackage(name=name, version=version, marker=marker)
 
 
-def create_normal_package(name: str, version: str | None) -> AdditionalMypyDependency:
-    return NormalPackage(name=name, version=version)
+def create_normal_package(name: str, version: str | None, marker: str | None = None) -> AdditionalMypyDependency:
+    return NormalPackage(name=name, version=version, marker=marker)
 
 
 def serialize_packages(packages: Iterable[AdditionalMypyDependency]) -> list[str]:
@@ -287,6 +443,24 @@ def type_stubs_have_changed(actual: dict, to_compare: dict) -> bool:
 
 
 def main() -> None:
+    import argparse
+
+    parser = argparse.ArgumentParser(
+        description="Update mypy additional_dependencies in .pre-commit-config.yaml"
+    )
+    parser.add_argument(
+        "--optional-extras",
+        type=str,
+        default="",
+        help="Comma-separated list of optional-dependencies extras to include for type checking (e.g., 'inference_cpu' or 'inference_cpu,test_extras')",
+    )
+    args = parser.parse_args()
+
+    # Parse optional extras from argument
+    optional_extras = None
+    if args.optional_extras:
+        optional_extras = [extra.strip() for extra in args.optional_extras.split(",") if extra.strip()]
+
     pyproject_file = Path("pyproject.toml")
     requirements_file = Path("requirements.txt")
     requirements_dev_file = Path("requirements-dev.txt")
@@ -294,7 +468,7 @@ def main() -> None:
 
     # Prefer pyproject.toml if it exists, otherwise fall back to requirements.txt
     if pyproject_file.exists():
-        additional_dependencies = parse_pyproject_toml(pyproject_file)
+        additional_dependencies = parse_pyproject_toml(pyproject_file, optional_extras)
     else:
         additional_dependencies = parse_multiple_requirements_file(
             [requirements_file, requirements_dev_file]
diff --git a/tests/test_markers_and_optional_deps.py b/tests/test_markers_and_optional_deps.py
new file mode 100644
index 0000000..7764314
--- /dev/null
+++ b/tests/test_markers_and_optional_deps.py
@@ -0,0 +1,167 @@
+"""Tests for marker preservation and optional dependencies support."""
+
+import tempfile
+from pathlib import Path
+
+from dependency_update_pre_commit.update_mypy_dependencies import (
+    NormalPackage,
+    parse_optional_dependencies,
+    parse_pyproject_toml,
+    parse_requirement_with_marker,
+)
+
+
+def test_parse_requirement_with_marker() -> None:
+    """Test that platform markers are preserved."""
+    result = parse_requirement_with_marker('numpy==2.1.1; sys_platform != "win32"')
+    assert isinstance(result, NormalPackage)
+    assert result.name == "numpy"
+    assert result.version == "2.1.1"
+    assert result.marker == 'sys_platform != "win32"'
+
+
+def test_parse_requirement_without_marker() -> None:
+    """Test parsing requirement without marker."""
+    result = parse_requirement_with_marker("requests==2.32.0")
+    # requests has a type stub, so it will be TypeStubPackage
+    assert hasattr(result, "marker")
+    assert result.marker is None
+
+
+def test_serialize_package_with_marker() -> None:
+    """Test that packages serialize with markers."""
+    pkg = NormalPackage(name="numpy", version="2.1.1", marker='sys_platform != "win32"')
+    assert pkg.serialize() == 'numpy==2.1.1; sys_platform != "win32"'
+
+
+def test_serialize_package_without_marker() -> None:
+    """Test that packages without markers serialize correctly."""
+    pkg = NormalPackage(name="numpy", version="2.1.1", marker=None)
+    assert pkg.serialize() == "numpy==2.1.1"
+
+
+def test_parse_pyproject_toml_preserves_markers() -> None:
+    """Test that pyproject.toml parsing preserves markers."""
+    with tempfile.NamedTemporaryFile(mode="w", suffix=".toml", delete=False) as f:
+        f.write(
+            """
+[project]
+dependencies = [
+    "numpy==2.1.1; sys_platform != 'win32'",
+    "numpy==1.26.4; sys_platform == 'win32'",
+]
+"""
+        )
+        temp_path = Path(f.name)
+
+    try:
+        result = parse_pyproject_toml(temp_path)
+        # Should have two distinct numpy packages with different markers
+        numpy_packages = [p for p in result if hasattr(p, "name") and p.name == "numpy"]
+        assert len(numpy_packages) == 2
+
+        # Check that markers are preserved
+        markers = {p.marker for p in numpy_packages}
+        assert 'sys_platform != "win32"' in markers
+        assert 'sys_platform == "win32"' in markers
+    finally:
+        temp_path.unlink()
+
+
+def test_parse_optional_dependencies() -> None:
+    """Test parsing optional-dependencies."""
+    pyproject_data = {
+        "project": {
+            "optional-dependencies": {
+                "inference_cpu": [
+                    "torch==2.7.1",
+                    "ultralytics==8.3.159",
+                ]
+            }
+        }
+    }
+    packages = parse_optional_dependencies(pyproject_data, ["inference_cpu"])
+    package_names = {p.name for p in packages if hasattr(p, "name")}
+    # torch has a type stub (types-torch), ultralytics doesn't
+    assert "types-torch" in package_names or "torch" in package_names
+    assert "ultralytics" in package_names
+
+
+def test_parse_optional_dependencies_with_marker() -> None:
+    """Test parsing optional dependencies with markers."""
+    pyproject_data = {
+        "project": {
+            "optional-dependencies": {
+                "inference_cuda": [
+                    "torch==2.7.1",
+                    'tensorrt==10.12.0.36; sys_platform != "darwin"',
+                ]
+            }
+        }
+    }
+    packages = parse_optional_dependencies(pyproject_data, ["inference_cuda"])
+
+    # Find tensorrt package
+    tensorrt_pkg = None
+    for p in packages:
+        if hasattr(p, "name") and p.name == "tensorrt":
+            tensorrt_pkg = p
+            break
+
+    assert tensorrt_pkg is not None
+    assert tensorrt_pkg.marker == 'sys_platform != "darwin"'
+
+
+def test_parse_pyproject_with_optional_extras() -> None:
+    """Test full pyproject.toml parsing with optional extras."""
+    with tempfile.NamedTemporaryFile(mode="w", suffix=".toml", delete=False) as f:
+        f.write(
+            """
+[project]
+dependencies = [
+    "requests==2.32.0",
+]
+
+[project.optional-dependencies]
+inference = [
+    "torch==2.7.1",
+    "ultralytics==8.3.159",
+]
+"""
+        )
+        temp_path = Path(f.name)
+
+    try:
+        # Parse without optional extras
+        result_without_extras = parse_pyproject_toml(temp_path, optional_extras=None)
+        package_names_without = {p.name for p in result_without_extras if hasattr(p, "name")}
+        assert "torch" not in package_names_without
+        assert "types-torch" not in package_names_without
+
+        # Parse with optional extras
+        result_with_extras = parse_pyproject_toml(temp_path, optional_extras=["inference"])
+        package_names_with = {p.name for p in result_with_extras if hasattr(p, "name")}
+        # torch has a type stub, so it may be types-torch instead
+        assert "torch" in package_names_with or "types-torch" in package_names_with
+        assert "ultralytics" in package_names_with
+    finally:
+        temp_path.unlink()
+
+
+def test_hash_includes_marker() -> None:
+    """Test that hash includes marker so platform-specific versions are distinct."""
+    pkg1 = NormalPackage(name="numpy", version="2.1.1", marker='sys_platform != "win32"')
+    pkg2 = NormalPackage(name="numpy", version="1.26.4", marker='sys_platform == "win32"')
+    pkg3 = NormalPackage(name="numpy", version="2.1.1", marker='sys_platform != "win32"')
+
+    # Different markers should have different hashes
+    assert hash(pkg1) != hash(pkg2)
+
+    # Same name, version, and marker should have same hash
+    assert hash(pkg1) == hash(pkg3)
+
+    # They should be unequal
+    assert pkg1 != pkg2
+
+    # They should be equal
+    assert pkg1 == pkg3

From 248e47aee0ee279370037d618f99f95288e4d44b Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:49:17 +0100
Subject: [PATCH 02/10] OP#9364: Update `.idea` module file to include `src` as
 source folder and exclude `.venv`

---
 .idea/dependency-update-pre-commit.iml | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/.idea/dependency-update-pre-commit.iml b/.idea/dependency-update-pre-commit.iml
index 292aeb0..6f5e108 100644
--- a/.idea/dependency-update-pre-commit.iml
+++ b/.idea/dependency-update-pre-commit.iml
@@ -1,12 +1,15 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <module type="PYTHON_MODULE" version="4">
   <component name="NewModuleRootManager">
-    <content url="file://$MODULE_DIR$" />
-    <orderEntry type="inheritedJdk" />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+      <excludeFolder url="file://$MODULE_DIR$/.venv" />
+    </content>
+    <orderEntry type="jdk" jdkName="uv (dependency-update-pre-commit)" jdkType="Python SDK" />
     <orderEntry type="sourceFolder" forTests="false" />
   </component>
   <component name="PyDocumentationSettings">
     <option name="format" value="PLAIN" />
     <option name="myDocStringFormat" value="Plain" />
   </component>
-</module>
+</module>
\ No newline at end of file

From 4a17a489ad915fe554df1b5aabd3023f3e388da2 Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:49:41 +0100
Subject: [PATCH 03/10] OP#9364: Format code

---
 .../update_mypy_dependencies.py               | 46 ++++++++++++++-----
 tests/test_markers_and_optional_deps.py       | 20 ++++++--
 2 files changed, 50 insertions(+), 16 deletions(-)

diff --git a/src/dependency_update_pre_commit/update_mypy_dependencies.py b/src/dependency_update_pre_commit/update_mypy_dependencies.py
index 04ee452..a32a587 100755
--- a/src/dependency_update_pre_commit/update_mypy_dependencies.py
+++ b/src/dependency_update_pre_commit/update_mypy_dependencies.py
@@ -60,7 +60,11 @@ def __hash__(self) -> int:
     def __eq__(self, other: object) -> bool:
         if not isinstance(other, Package):
             return False
-        return (self.name, self.version, self.marker) == (other.name, other.version, other.marker)
+        return (self.name, self.version, self.marker) == (
+            other.name,
+            other.version,
+            other.marker,
+        )
 
 
 class TypeStubPackage(Package):
@@ -76,7 +80,9 @@ def version(self) -> str | None:
     def marker(self) -> str | None:
         return self._marker
 
-    def __init__(self, name: str, version: str | None, marker: str | None = None) -> None:
+    def __init__(
+        self, name: str, version: str | None, marker: str | None = None
+    ) -> None:
         self._name = name
         self._version = version
         self._marker = marker
@@ -101,7 +107,9 @@ def version(self) -> str | None:
     def marker(self) -> str | None:
         return self._marker
 
-    def __init__(self, name: str, version: str | None, marker: str | None = None) -> None:
+    def __init__(
+        self, name: str, version: str | None, marker: str | None = None
+    ) -> None:
         self._name = name
         self._version = version
         self._marker = marker
@@ -155,7 +163,9 @@ def parse_multiple_requirements_file(
     return packages
 
 
-def parse_requirement_with_marker(requirement_line: str) -> AdditionalMypyDependency | None:
+def parse_requirement_with_marker(
+    requirement_line: str,
+) -> AdditionalMypyDependency | None:
     """Parse requirement preserving environment marker.
 
     Args:
@@ -239,7 +249,9 @@ def parse_pyproject_toml(
     return packages
 
 
-def get_extra_index_urls(pyproject_data: dict, extra_names: list[str]) -> set[ExtraIndexUrl]:
+def get_extra_index_urls(
+    pyproject_data: dict, extra_names: list[str]
+) -> set[ExtraIndexUrl]:
     """Extract extra index URLs for specified optional extras from pyproject.toml.
 
     Args:
@@ -268,7 +280,9 @@ def get_extra_index_urls(pyproject_data: dict, extra_names: list[str]) -> set[Ex
 
         # Get package names from this extra
         for dep in optional_deps[extra_name]:
-            package_name = dep.split(";")[0].split("=")[0].split("<")[0].split(">")[0].strip()
+            package_name = (
+                dep.split(";")[0].split("=")[0].split("<")[0].split(">")[0].strip()
+            )
 
             # Check if this package has a custom source
             if package_name in sources:
@@ -307,7 +321,9 @@ def parse_optional_dependencies(
 
     for extra_name in extra_names:
         if extra_name not in optional_deps:
-            print(f"Warning: Optional extra '{extra_name}' not found in [project.optional-dependencies]")
+            print(
+                f"Warning: Optional extra '{extra_name}' not found in [project.optional-dependencies]"
+            )
             continue
 
         for dependency in optional_deps[extra_name]:
@@ -371,11 +387,15 @@ def create_extra_index_url(url: str) -> AdditionalMypyDependency:
     return ExtraIndexUrl(url)
 
 
-def create_package(name: str, version: str | None, marker: str | None = None) -> AdditionalMypyDependency:
+def create_package(
+    name: str, version: str | None, marker: str | None = None
+) -> AdditionalMypyDependency:
     """Check if a type stub exists for a given package name and return it."""
     types_package_name = f"types-{name}"
     if __check_types_for_package_exists(types_package_name):
-        return create_type_stub_package(name=types_package_name, version=version, marker=marker)
+        return create_type_stub_package(
+            name=types_package_name, version=version, marker=marker
+        )
 
     # Some packages already provide type stubs with their package
     # If they don't pre-commit mypy won't fail
@@ -393,7 +413,9 @@ def create_type_stub_package(
     return TypeStubPackage(name=name, version=version, marker=marker)
 
 
-def create_normal_package(name: str, version: str | None, marker: str | None = None) -> AdditionalMypyDependency:
+def create_normal_package(
+    name: str, version: str | None, marker: str | None = None
+) -> AdditionalMypyDependency:
     return NormalPackage(name=name, version=version, marker=marker)
 
 
@@ -459,7 +481,9 @@ def main() -> None:
     # Parse optional extras from argument
     optional_extras = None
     if args.optional_extras:
-        optional_extras = [extra.strip() for extra in args.optional_extras.split(",") if extra.strip()]
+        optional_extras = [
+            extra.strip() for extra in args.optional_extras.split(",") if extra.strip()
+        ]
 
     pyproject_file = Path("pyproject.toml")
     requirements_file = Path("requirements.txt")
diff --git a/tests/test_markers_and_optional_deps.py b/tests/test_markers_and_optional_deps.py
index 7764314..c916e7a 100644
--- a/tests/test_markers_and_optional_deps.py
+++ b/tests/test_markers_and_optional_deps.py
@@ -134,12 +134,16 @@ def test_parse_pyproject_with_optional_extras() -> None:
     try:
         # Parse without optional extras
         result_without_extras = parse_pyproject_toml(temp_path, optional_extras=None)
-        package_names_without = {p.name for p in result_without_extras if hasattr(p, "name")}
+        package_names_without = {
+            p.name for p in result_without_extras if hasattr(p, "name")
+        }
         assert "torch" not in package_names_without
         assert "types-torch" not in package_names_without
 
         # Parse with optional extras
-        result_with_extras = parse_pyproject_toml(temp_path, optional_extras=["inference"])
+        result_with_extras = parse_pyproject_toml(
+            temp_path, optional_extras=["inference"]
+        )
         package_names_with = {p.name for p in result_with_extras if hasattr(p, "name")}
         # torch has a type stub, so it may be types-torch instead
         assert "torch" in package_names_with or "types-torch" in package_names_with
@@ -150,9 +154,15 @@ def test_parse_pyproject_with_optional_extras() -> None:
 
 def test_hash_includes_marker() -> None:
     """Test that hash includes marker so platform-specific versions are distinct."""
-    pkg1 = NormalPackage(name="numpy", version="2.1.1", marker='sys_platform != "win32"')
-    pkg2 = NormalPackage(name="numpy", version="1.26.4", marker='sys_platform == "win32"')
-    pkg3 = NormalPackage(name="numpy", version="2.1.1", marker='sys_platform != "win32"')
+    pkg1 = NormalPackage(
+        name="numpy", version="2.1.1", marker='sys_platform != "win32"'
+    )
+    pkg2 = NormalPackage(
+        name="numpy", version="1.26.4", marker='sys_platform == "win32"'
+    )
+    pkg3 = NormalPackage(
+        name="numpy", version="2.1.1", marker='sys_platform != "win32"'
+    )
 
     # Different markers should have different hashes
     assert hash(pkg1) != hash(pkg2)

From 75021ec94dee43a7284d4b8ba5d716e882bfea09 Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 16:49:52 +0100
Subject: [PATCH 04/10] OP#9364: Update lock file

---
 uv.lock | 802 ++++++++++++++++++++++++++++----------------------------
 1 file changed, 402 insertions(+), 400 deletions(-)

diff --git a/uv.lock b/uv.lock
index c46adbb..116ff3d 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,192 +1,192 @@
 version = 1
-revision = 1
+revision = 3
 requires-python = ">=3.11"
 
 [[package]]
 name = "certifi"
 version = "2026.1.4"
 source = { registry = "https://pypi.org/simple" }
-sdist = { url = "https://files.pythonhosted.org/packages/e0/2d/a891ca51311197f6ad14a7ef42e2399f36cf2f9bd44752b3dc4eab60fdc5/certifi-2026.1.4.tar.gz", hash = "sha256:ac726dd470482006e014ad384921ed6438c457018f4b3d204aea4281258b2120", size = 154268 }
+sdist = { url = "https://files.pythonhosted.org/packages/e0/2d/a891ca51311197f6ad14a7ef42e2399f36cf2f9bd44752b3dc4eab60fdc5/certifi-2026.1.4.tar.gz", hash = "sha256:ac726dd470482006e014ad384921ed6438c457018f4b3d204aea4281258b2120", size = 154268, upload-time = "2026-01-04T02:42:41.825Z" }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/e6/ad/3cc14f097111b4de0040c83a525973216457bbeeb63739ef1ed275c1c021/certifi-2026.1.4-py3-none-any.whl", hash = "sha256:9943707519e4add1115f44c2bc244f782c0249876bf51b6599fee1ffbedd685c", size = 152900, upload-time = "2026-01-04T02:42:40.15Z" },
 ]
 
 [[package]]
 name = "cfgv"
 version = "3.5.0"
 source = { registry = "https://pypi.org/simple" }
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+sdist = { url = "https://files.pythonhosted.org/packages/4e/b5/721b8799b04bf9afe054a3899c6cf4e880fcf8563cc71c15610242490a0c/cfgv-3.5.0.tar.gz", hash = "sha256:d5b1034354820651caa73ede66a6294d6e95c1b00acc5e9b098e917404669132", size = 7334, upload-time = "2025-11-19T20:55:51.612Z" }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/db/3c/33bac158f8ab7f89b2e59426d5fe2e4f63f7ed25df84c036890172b412b5/cfgv-3.5.0-py2.py3-none-any.whl", hash = "sha256:a8dc6b26ad22ff227d2634a65cb388215ce6cc96bbcc5cfde7641ae87e8dacc0", size = 7445, upload-time = "2025-11-19T20:55:50.744Z" },
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+    { url = "https://files.pythonhosted.org/packages/39/08/aaaad47bc4e9dc8c725e68f9d04865dbcb2052843ff09c97b08904852d84/urllib3-2.6.3-py3-none-any.whl", hash = "sha256:bf272323e553dfb2e87d9bfd225ca7b0f467b919d7bbd355436d3fd37cb0acd4", size = 131584, upload-time = "2026-01-07T16:24:42.685Z" },
 ]
 
 [[package]]
@@ -687,9 +689,9 @@ dependencies = [
     { name = "filelock" },
     { name = "platformdirs" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/aa/a3/4d310fa5f00863544e1d0f4de93bddec248499ccf97d4791bc3122c9d4f3/virtualenv-20.36.1.tar.gz", hash = "sha256:8befb5c81842c641f8ee658481e42641c68b5eab3521d8e092d18320902466ba", size = 6032239 }
+sdist = { url = "https://files.pythonhosted.org/packages/aa/a3/4d310fa5f00863544e1d0f4de93bddec248499ccf97d4791bc3122c9d4f3/virtualenv-20.36.1.tar.gz", hash = "sha256:8befb5c81842c641f8ee658481e42641c68b5eab3521d8e092d18320902466ba", size = 6032239, upload-time = "2026-01-09T18:21:01.296Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/6a/2a/dc2228b2888f51192c7dc766106cd475f1b768c10caaf9727659726f7391/virtualenv-20.36.1-py3-none-any.whl", hash = "sha256:575a8d6b124ef88f6f51d56d656132389f961062a9177016a50e4f507bbcc19f", size = 6008258 },
+    { url = "https://files.pythonhosted.org/packages/6a/2a/dc2228b2888f51192c7dc766106cd475f1b768c10caaf9727659726f7391/virtualenv-20.36.1-py3-none-any.whl", hash = "sha256:575a8d6b124ef88f6f51d56d656132389f961062a9177016a50e4f507bbcc19f", size = 6008258, upload-time = "2026-01-09T18:20:59.425Z" },
 ]
 
 [[package]]
@@ -700,7 +702,7 @@ dependencies = [
     { name = "pathspec" },
     { name = "pyyaml" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/28/a0/8fc2d68e132cf918f18273fdc8a1b8432b60d75ac12fdae4b0ef5c9d2e8d/yamllint-1.38.0.tar.gz", hash = "sha256:09e5f29531daab93366bb061e76019d5e91691ef0a40328f04c927387d1d364d", size = 142446 }
+sdist = { url = "https://files.pythonhosted.org/packages/28/a0/8fc2d68e132cf918f18273fdc8a1b8432b60d75ac12fdae4b0ef5c9d2e8d/yamllint-1.38.0.tar.gz", hash = "sha256:09e5f29531daab93366bb061e76019d5e91691ef0a40328f04c927387d1d364d", size = 142446, upload-time = "2026-01-13T07:47:53.276Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/05/92/aed08e68de6e6a3d7c2328ce7388072cd6affc26e2917197430b646aed02/yamllint-1.38.0-py3-none-any.whl", hash = "sha256:fc394a5b3be980a4062607b8fdddc0843f4fa394152b6da21722f5d59013c220", size = 68940 },
+    { url = "https://files.pythonhosted.org/packages/05/92/aed08e68de6e6a3d7c2328ce7388072cd6affc26e2917197430b646aed02/yamllint-1.38.0-py3-none-any.whl", hash = "sha256:fc394a5b3be980a4062607b8fdddc0843f4fa394152b6da21722f5d59013c220", size = 68940, upload-time = "2026-01-13T07:47:51.343Z" },
 ]

From 4369f85bdcf03b4856e9fc71ff7e2934a5756930 Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 18:06:47 +0100
Subject: [PATCH 05/10] OP#9364: Add type annotations and refine docstrings for
 dependency parsing functions

---
 .../update_mypy_dependencies.py               | 31 ++++++++++++-------
 1 file changed, 19 insertions(+), 12 deletions(-)

diff --git a/src/dependency_update_pre_commit/update_mypy_dependencies.py b/src/dependency_update_pre_commit/update_mypy_dependencies.py
index a32a587..e14f701 100755
--- a/src/dependency_update_pre_commit/update_mypy_dependencies.py
+++ b/src/dependency_update_pre_commit/update_mypy_dependencies.py
@@ -169,10 +169,12 @@ def parse_requirement_with_marker(
     """Parse requirement preserving environment marker.
 
     Args:
-        requirement_line: PEP 508 requirement string (e.g., 'numpy==2.1.1; sys_platform != "win32"')
+        requirement_line (str): PEP 508 requirement string (e.g.,
+            'numpy==2.1.1; sys_platform != "win32"').
 
     Returns:
-        Package or ExtraIndexUrl object, or None if parsing fails
+        AdditionalDependency | None:  A Package or ExtraIndexUrl object, or None if
+            parsing fails.
     """
     # Handle extra-index-url separately
     if match_extra_index_url := pattern_extra_index_url.match(requirement_line):
@@ -208,11 +210,13 @@ def parse_pyproject_toml(
     """Parse pyproject.toml and extract package names from dependencies.
 
     Args:
-        pyproject_file: Path to pyproject.toml
-        optional_extras: List of optional extras to include (e.g., ['inference_cpu'])
+        pyproject_file (Path): Path to pyproject.toml.
+        optional_extras (list[str]): List of optional extras to include
+            (e.g., ['inference_cpu']).
 
     Returns:
-        Set of packages to include in mypy's additional_dependencies
+        set[AdditionalMypyDependency]: Set of packages to include in mypy's
+            additional_dependencies.
     """
     if not pyproject_file.exists():
         return set()
@@ -255,11 +259,11 @@ def get_extra_index_urls(
     """Extract extra index URLs for specified optional extras from pyproject.toml.
 
     Args:
-        pyproject_data: Parsed pyproject.toml data
-        extra_names: List of extra names (e.g., ['inference_cpu'])
+        pyproject_data (dict): Parsed pyproject.toml data.
+        extra_names (list[str]): List of extra names (e.g., ['inference_cpu']).
 
     Returns:
-        Set of ExtraIndexUrl objects
+        set[ExtraIndexUrl]: Set of ExtraIndexUrl objects.
     """
     index_urls = set()
 
@@ -309,11 +313,13 @@ def parse_optional_dependencies(
     """Parse specified optional-dependencies extras from pyproject.toml.
 
     Args:
-        pyproject_data: Parsed pyproject.toml data
-        extra_names: List of extra names to include (e.g., ['inference_cpu'])
+        pyproject_data (dict): Parsed pyproject.toml data
+        extra_names (list[str]): List of extra names to include
+            (e.g., ['inference_cpu']).
 
     Returns:
-        Set of packages and extra index URLs from the specified extras
+        set[AdditionalMypyDependency]: Set of packages and extra index URLs from
+            the specified extras.
     """
     packages = set()
 
@@ -322,7 +328,8 @@ def parse_optional_dependencies(
     for extra_name in extra_names:
         if extra_name not in optional_deps:
             print(
-                f"Warning: Optional extra '{extra_name}' not found in [project.optional-dependencies]"
+                f"Warning: Optional extra '{extra_name}' not found in "
+                "[project.optional-dependencies]"
             )
             continue
 

From fd8b684acb9ecb141e228a717069c30581377eed Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 18:06:55 +0100
Subject: [PATCH 06/10] OP#9364: Refactor test suite for dependency parsing
 with parameterized and modularized test cases

---
 tests/test_parse_requirements.py | 443 +++++++++++++++++++++++++------
 1 file changed, 363 insertions(+), 80 deletions(-)

diff --git a/tests/test_parse_requirements.py b/tests/test_parse_requirements.py
index 2653b6b..3ad246b 100644
--- a/tests/test_parse_requirements.py
+++ b/tests/test_parse_requirements.py
@@ -1,8 +1,11 @@
 """Tests for parsing requirements from various sources."""
 
 import tempfile
+from dataclasses import dataclass
 from pathlib import Path
 
+import pytest
+
 from dependency_update_pre_commit.update_mypy_dependencies import (
     NormalPackage,
     TypeStubPackage,
@@ -12,89 +15,369 @@
 )
 
 
-def test_parse_requirement_with_version() -> None:
-    """Test parsing a requirement with version specification."""
-    result = parse_requirement("requests==2.32.0")
-    assert isinstance(result, (NormalPackage, TypeStubPackage))
-    assert result.name in ("requests", "types-requests")
-
-
-def test_parse_requirement_without_version() -> None:
-    """Test parsing a requirement without version specification."""
-    result = parse_requirement("pytest")
-    assert isinstance(result, (NormalPackage, TypeStubPackage))
-
-
-def test_parse_requirements_file() -> None:
-    """Test parsing a requirements.txt file."""
-    with tempfile.NamedTemporaryFile(mode="w", suffix=".txt", delete=False) as f:
-        f.write("requests==2.32.0\n")
-        f.write("# This is a comment\n")
-        f.write("pytest>=8.0.0\n")
-        f.write("\n")
-        temp_path = Path(f.name)
-
-    try:
-        result = parse_requirements_file(temp_path)
-        assert len(result) > 0
-        # Check that comments and empty lines are ignored
-        assert all(hasattr(dep, "serialize") for dep in result)
-    finally:
-        temp_path.unlink()
-
-
-def test_parse_pyproject_toml() -> None:
-    """Test parsing a pyproject.toml file."""
-    with tempfile.NamedTemporaryFile(mode="w", suffix=".toml", delete=False) as f:
-        f.write(
-            """
-[project]
-dependencies = [
-    "requests==2.32.0",
-    "pandas==2.0.0",
-]
-
-[dependency-groups]
-dev = [
-    "pytest==8.0.0",
-]
-"""
+class TestParseRequirement:
+    """Tests for parse_requirement() function."""
+
+    def test_parse_requirement_with_version(self, mock_pypi: None) -> None:
+        requirement = "requests==2.32.0"
+
+        result = parse_requirement(requirement)
+
+        assert isinstance(result, (NormalPackage, TypeStubPackage))
+        expected = ExpectedPackage(name="requests", version="2.32.0", marker=None)
+        assert_package_matches(result, expected)
+
+    def test_parse_requirement_without_version(self, mock_pypi: None) -> None:
+        requirement = "pytest"
+
+        result = parse_requirement(requirement)
+
+        assert isinstance(result, (NormalPackage, TypeStubPackage))
+        expected = ExpectedPackage(name="pytest", version=None, marker=None)
+        assert_package_matches(result, expected)
+
+
+class TestParseRequirementsFile:
+    def test_parse_basic_requirements(self, mock_pypi: None) -> None:
+        given = GivenRequirementsFile(
+            file_content=("requests==2.32.0\npytest>=8.0.0\nnumpy\n"),
+            expected_packages=[
+                ExpectedPackage("requests", "2.32.0", None),
+                ExpectedPackage("pytest", "8.0.0", None),
+                ExpectedPackage("numpy", None, None),
+            ],
+        )
+
+        temp_file = create_temp_file(given.file_content, ".txt")
+        try:
+            result = parse_requirements_file(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+            assert len(packages) == len(given.expected_packages)
+
+            for expected in given.expected_packages:
+                matching = [
+                    p
+                    for p in packages
+                    if p.name == expected.name or p.name == f"types-{expected.name}"
+                ]
+                assert len(matching) == 1, (
+                    f"Expected one package named '{expected.name}'"
+                )
+                assert_package_matches(matching[0], expected)
+        finally:
+            temp_file.unlink()
+
+    def test_parse_ignores_comments_and_blanks(self, mock_pypi: None) -> None:
+        given = GivenRequirementsFile(
+            file_content=(
+                "# This is a comment\n"
+                "requests==2.32.0\n"
+                "\n"
+                "  \n"
+                "# Another comment\n"
+                "pytest>=8.0.0\n"
+            ),
+            expected_packages=[
+                ExpectedPackage("requests", "2.32.0", None),
+                ExpectedPackage("pytest", "8.0.0", None),
+            ],
+        )
+
+        temp_file = create_temp_file(given.file_content, ".txt")
+        try:
+            result = parse_requirements_file(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+            assert len(packages) == len(given.expected_packages)
+
+            # Verify each expected package
+            for expected in given.expected_packages:
+                matching = [
+                    p
+                    for p in packages
+                    if p.name == expected.name or p.name == f"types-{expected.name}"
+                ]
+                assert len(matching) == 1
+                assert_package_matches(matching[0], expected)
+        finally:
+            temp_file.unlink()
+
+
+class TestParsePyprojectToml:
+    def test_parse_basic_dependencies(self, mock_pypi: None) -> None:
+        given = GivenPyprojectToml(
+            toml_content=(
+                """
+                [project]
+                dependencies = [
+                    "requests==2.32.0",
+                    "pandas==2.0.0",
+                ]
+                """
+            ),
+            optional_extras=None,
+            expected_packages=[
+                ExpectedPackage("requests", "2.32.0", None),
+                ExpectedPackage("pandas", "2.0.0", None),
+            ],
+        )
+
+        temp_file = create_temp_file(given.toml_content, ".toml")
+        try:
+            result = parse_pyproject_toml(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+            assert len(packages) >= len(given.expected_packages)
+
+            for expected in given.expected_packages:
+                matching = [
+                    p
+                    for p in packages
+                    if p.name == expected.name or p.name == f"types-{expected.name}"
+                ]
+                assert len(matching) == 1, (
+                    f"Expected one package named '{expected.name}'"
+                )
+                assert_package_matches(matching[0], expected)
+        finally:
+            temp_file.unlink()
+
+    def test_parse_with_platform_markers(self, mock_pypi: None) -> None:
+        given = GivenPyprojectToml(
+            toml_content=(
+                """
+                [project]
+                dependencies = [
+                    "requests==2.32.0",
+                    "pywin32==310; sys_platform == 'win32'",
+                ]
+                """
+            ),
+            optional_extras=None,
+            expected_packages=[
+                ExpectedPackage("requests", "2.32.0", None),
+                ExpectedPackage("pywin32", "310", 'sys_platform == "win32"'),
+            ],
         )
-        temp_path = Path(f.name)
-
-    try:
-        result = parse_pyproject_toml(temp_path)
-        assert len(result) >= 3  # At least the three packages specified
-    finally:
-        temp_path.unlink()
-
-
-def test_parse_pyproject_toml_with_platform_specific() -> None:
-    """Test parsing pyproject.toml with platform-specific dependencies."""
-    with tempfile.NamedTemporaryFile(mode="w", suffix=".toml", delete=False) as f:
-        f.write(
-            """
-[project]
-dependencies = [
-    "requests==2.32.0",
-    "pywin32==310; sys_platform == 'win32'",
-]
-"""
+
+        temp_file = create_temp_file(given.toml_content, ".toml")
+        try:
+            result = parse_pyproject_toml(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+
+            # Check requests
+            requests_pkg = [
+                p
+                for p in packages
+                if p.name == "requests" or p.name == "types-requests"
+            ]
+            assert len(requests_pkg) == 1
+            assert_package_matches(
+                requests_pkg[0], ExpectedPackage("requests", "2.32.0", None)
+            )
+
+            # Check pywin32 with marker
+            pywin32_pkg = [p for p in packages if "pywin32" in p.name]
+            assert len(pywin32_pkg) == 1
+            assert_package_matches(
+                pywin32_pkg[0],
+                ExpectedPackage("pywin32", "310", 'sys_platform == "win32"'),
+            )
+        finally:
+            temp_file.unlink()
+
+    def test_parse_with_dependency_groups(self, mock_pypi: None) -> None:
+        given = GivenPyprojectToml(
+            toml_content=(
+                """
+                [project]
+                dependencies = [
+                    "requests==2.32.0",
+                ]
+
+                [dependency-groups]
+                dev = [
+                    "pytest==8.0.0",
+                ]
+                """
+            ),
+            optional_extras=None,
+            expected_packages=[
+                ExpectedPackage("requests", "2.32.0", None),
+                ExpectedPackage("pytest", "8.0.0", None),
+            ],
         )
-        temp_path = Path(f.name)
 
-    try:
-        result = parse_pyproject_toml(temp_path)
-        # Should parse both dependencies, ignoring the platform specifier
-        assert len(result) >= 2
-    finally:
-        temp_path.unlink()
+        temp_file = create_temp_file(given.toml_content, ".toml")
+        try:
+            result = parse_pyproject_toml(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+
+            for expected in given.expected_packages:
+                matching = [
+                    p
+                    for p in packages
+                    if p.name == expected.name or p.name == f"types-{expected.name}"
+                ]
+                assert len(matching) >= 1, (
+                    f"Expected package '{expected.name}' not found"
+                )
+                assert_package_matches(matching[0], expected)
+        finally:
+            temp_file.unlink()
+
+    def test_parse_with_multiple_platform_versions(self, mock_pypi: None) -> None:
+        given = GivenPyprojectToml(
+            toml_content=(
+                """
+                [project]
+                dependencies = [
+                    "numpy==2.1.1; sys_platform != 'win32'",
+                    "numpy==1.26.4; sys_platform == 'win32'",
+                ]
+                """
+            ),
+            optional_extras=None,
+            expected_packages=[
+                ExpectedPackage("numpy", "2.1.1", 'sys_platform != "win32"'),
+                ExpectedPackage("numpy", "1.26.4", 'sys_platform == "win32"'),
+            ],
+        )
+
+        temp_file = create_temp_file(given.toml_content, ".toml")
+        try:
+            result = parse_pyproject_toml(temp_file)
+
+            packages = [
+                p for p in result if isinstance(p, (NormalPackage, TypeStubPackage))
+            ]
+            numpy_packages = [p for p in packages if p.name == "numpy"]
+
+            # Should have TWO distinct numpy packages
+            assert len(numpy_packages) == 2, (
+                f"Expected 2 numpy packages with different markers, got {len(numpy_packages)}"
+            )
+
+            # Verify both expected versions exist
+            versions = {p.version for p in numpy_packages}
+            assert "2.1.1" in versions
+            assert "1.26.4" in versions
+
+            # Verify both markers exist
+            markers = {p.marker for p in numpy_packages}
+            assert 'sys_platform != "win32"' in markers
+            assert 'sys_platform == "win32"' in markers
+        finally:
+            temp_file.unlink()
+
+
+class TestEdgeCases:
+    def test_parse_nonexistent_requirements_file(self) -> None:
+        nonexistent_path = Path("/nonexistent/requirements.txt")
+
+        result = parse_requirements_file(nonexistent_path)
+
+        assert len(result) == 0
+        assert isinstance(result, set)
+
+    def test_parse_nonexistent_pyproject_toml(self) -> None:
+        nonexistent_path = Path("/nonexistent/pyproject.toml")
+
+        result = parse_pyproject_toml(nonexistent_path)
+
+        assert len(result) == 0
+        assert isinstance(result, set)
+
+
+@dataclass
+class ExpectedPackage:
+    name: str
+    version: str | None
+    marker: str | None
+
+
+@dataclass
+class GivenRequirementsFile:
+    file_content: str
+    expected_packages: list[ExpectedPackage]
+
+
+@dataclass
+class GivenPyprojectToml:
+    toml_content: str
+    optional_extras: list[str] | None
+    expected_packages: list[ExpectedPackage]
+
+
+def create_temp_file(content: str, suffix: str) -> Path:
+    """Create a temporary file with given content."""
+    with tempfile.NamedTemporaryFile(mode="w", suffix=suffix, delete=False) as f:
+        f.write(content)
+        return Path(f.name)
+
+
+def assert_package_matches(
+    actual: NormalPackage | TypeStubPackage,
+    expected: ExpectedPackage,
+) -> None:
+    """Assert that a package matches expected attributes.
+
+    Allows TypeStubPackage with 'types-' prefix substitution.
+    """
+    # Handle type stub substitution (e.g., 'requests' -> 'types-requests')
+    if isinstance(actual, TypeStubPackage):
+        expected_name_with_stub = f"types-{expected.name}"
+        assert actual.name in (expected.name, expected_name_with_stub), (
+            f"Expected name '{expected.name}' or '{expected_name_with_stub}', "
+            f"got '{actual.name}'"
+        )
+    else:
+        assert actual.name == expected.name, (
+            f"Expected name '{expected.name}', got '{actual.name}'"
+        )
+
+    assert actual.version == expected.version, (
+        f"Expected version '{expected.version}', got '{actual.version}'"
+    )
+    assert actual.marker == expected.marker, (
+        f"Expected marker '{expected.marker}', got '{actual.marker}'"
+    )
+
+
+@pytest.fixture
+def mock_pypi(monkeypatch: pytest.MonkeyPatch) -> None:
+    """Mock PyPI API calls for deterministic testing.
 
+    Defines which packages have type stubs available.
+    """
+    packages_with_stubs = {
+        "requests",
+        "pyyaml",
+        "redis",
+    }
 
-def test_parse_nonexistent_file() -> None:
-    """Test parsing a file that doesn't exist."""
-    result = parse_requirements_file(Path("/nonexistent/file.txt"))
-    assert len(result) == 0
+    def mock_check_types_exists(package_name: str) -> bool:
+        # Remove 'types-' prefix if present
+        if package_name.startswith("types-"):
+            base_name = package_name[6:]
+            return base_name in packages_with_stubs
+        return False
 
-    result = parse_pyproject_toml(Path("/nonexistent/pyproject.toml"))
-    assert len(result) == 0
+    monkeypatch.setattr(
+        "dependency_update_pre_commit.update_mypy_dependencies."
+        "__check_types_for_package_exists",
+        mock_check_types_exists,
+    )

From 84b93cdae7879ec38299ca9c73d1413e45a3879f Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 18:07:01 +0100
Subject: [PATCH 07/10] OP#9364: Remove unused confest.py

---
 tests/conftest.py | 7 -------
 1 file changed, 7 deletions(-)
 delete mode 100644 tests/conftest.py

diff --git a/tests/conftest.py b/tests/conftest.py
deleted file mode 100644
index 01fb525..0000000
--- a/tests/conftest.py
+++ /dev/null
@@ -1,7 +0,0 @@
-"""Pytest configuration."""
-
-import sys
-from pathlib import Path
-
-# Add parent directory to path to allow importing the main module
-sys.path.insert(0, str(Path(__file__).parent.parent))

From 085a7b3d5a44a07a4bccc0a61206d5ae3a6d5b7c Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 18:20:02 +0100
Subject: [PATCH 08/10] OP#9364: Refactor assertions in tests for improved
 readability and add type checks for package instances

---
 tests/test_markers_and_optional_deps.py |  9 ++++--
 tests/test_parse_requirements.py        | 41 +++++++++++++------------
 2 files changed, 28 insertions(+), 22 deletions(-)

diff --git a/tests/test_markers_and_optional_deps.py b/tests/test_markers_and_optional_deps.py
index c916e7a..572c4f2 100644
--- a/tests/test_markers_and_optional_deps.py
+++ b/tests/test_markers_and_optional_deps.py
@@ -5,6 +5,7 @@
 
 from dependency_update_pre_commit.update_mypy_dependencies import (
     NormalPackage,
+    TypeStubPackage,
     parse_optional_dependencies,
     parse_pyproject_toml,
     parse_requirement_with_marker,
@@ -24,7 +25,7 @@ def test_parse_requirement_without_marker() -> None:
     """Test parsing requirement without marker."""
     result = parse_requirement_with_marker("requests==2.32.0")
     # requests has a type stub, so it will be TypeStubPackage
-    assert hasattr(result, "marker")
+    assert isinstance(result, TypeStubPackage)
     assert result.marker is None
 
 
@@ -61,7 +62,10 @@ def test_parse_pyproject_toml_preserves_markers() -> None:
         assert len(numpy_packages) == 2
 
         # Check that markers are preserved
-        markers = {p.marker for p in numpy_packages}
+        markers = []
+        for pkg in numpy_packages:
+            assert isinstance(pkg, NormalPackage)
+            markers.append(pkg.marker)
         assert 'sys_platform != "win32"' in markers
         assert 'sys_platform == "win32"' in markers
     finally:
@@ -109,6 +113,7 @@ def test_parse_optional_dependencies_with_marker() -> None:
             break
 
     assert tensorrt_pkg is not None
+    assert isinstance(tensorrt_pkg, NormalPackage)
     assert tensorrt_pkg.marker == 'sys_platform != "darwin"'
 
 
diff --git a/tests/test_parse_requirements.py b/tests/test_parse_requirements.py
index 3ad246b..f651082 100644
--- a/tests/test_parse_requirements.py
+++ b/tests/test_parse_requirements.py
@@ -63,9 +63,9 @@ def test_parse_basic_requirements(self, mock_pypi: None) -> None:
                     for p in packages
                     if p.name == expected.name or p.name == f"types-{expected.name}"
                 ]
-                assert len(matching) == 1, (
-                    f"Expected one package named '{expected.name}'"
-                )
+                assert (
+                    len(matching) == 1
+                ), f"Expected one package named '{expected.name}'"
                 assert_package_matches(matching[0], expected)
         finally:
             temp_file.unlink()
@@ -142,9 +142,9 @@ def test_parse_basic_dependencies(self, mock_pypi: None) -> None:
                     for p in packages
                     if p.name == expected.name or p.name == f"types-{expected.name}"
                 ]
-                assert len(matching) == 1, (
-                    f"Expected one package named '{expected.name}'"
-                )
+                assert (
+                    len(matching) == 1
+                ), f"Expected one package named '{expected.name}'"
                 assert_package_matches(matching[0], expected)
         finally:
             temp_file.unlink()
@@ -232,9 +232,9 @@ def test_parse_with_dependency_groups(self, mock_pypi: None) -> None:
                     for p in packages
                     if p.name == expected.name or p.name == f"types-{expected.name}"
                 ]
-                assert len(matching) >= 1, (
-                    f"Expected package '{expected.name}' not found"
-                )
+                assert (
+                    len(matching) >= 1
+                ), f"Expected package '{expected.name}' not found"
                 assert_package_matches(matching[0], expected)
         finally:
             temp_file.unlink()
@@ -268,7 +268,8 @@ def test_parse_with_multiple_platform_versions(self, mock_pypi: None) -> None:
 
             # Should have TWO distinct numpy packages
             assert len(numpy_packages) == 2, (
-                f"Expected 2 numpy packages with different markers, got {len(numpy_packages)}"
+                "Expected 2 numpy packages with different markers, got "
+                f"{len(numpy_packages)}"
             )
 
             # Verify both expected versions exist
@@ -345,16 +346,16 @@ def assert_package_matches(
             f"got '{actual.name}'"
         )
     else:
-        assert actual.name == expected.name, (
-            f"Expected name '{expected.name}', got '{actual.name}'"
-        )
-
-    assert actual.version == expected.version, (
-        f"Expected version '{expected.version}', got '{actual.version}'"
-    )
-    assert actual.marker == expected.marker, (
-        f"Expected marker '{expected.marker}', got '{actual.marker}'"
-    )
+        assert (
+            actual.name == expected.name
+        ), f"Expected name '{expected.name}', got '{actual.name}'"
+
+    assert (
+        actual.version == expected.version
+    ), f"Expected version '{expected.version}', got '{actual.version}'"
+    assert (
+        actual.marker == expected.marker
+    ), f"Expected marker '{expected.marker}', got '{actual.marker}'"
 
 
 @pytest.fixture

From 9755449e31b86b1aa29a3291bccba4071d232f46 Mon Sep 17 00:00:00 2001
From: Randy Seng <19281702+randy-seng@users.noreply.github.com>
Date: Fri, 13 Feb 2026 19:05:50 +0100
Subject: [PATCH 09/10] OP#9364: Fix lint errors

---
 .idea/dependency-update-pre-commit.iml                       | 2 +-
 src/dependency_update_pre_commit/update_mypy_dependencies.py | 5 ++++-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/.idea/dependency-update-pre-commit.iml b/.idea/dependency-update-pre-commit.iml
index 6f5e108..346c012 100644
--- a/.idea/dependency-update-pre-commit.iml
+++ b/.idea/dependency-update-pre-commit.iml
@@ -12,4 +12,4 @@
     <option name="format" value="PLAIN" />
     <option name="myDocStringFormat" value="Plain" />
   </component>
-</module>
\ No newline at end of file
+</module>
diff --git a/src/dependency_update_pre_commit/update_mypy_dependencies.py b/src/dependency_update_pre_commit/update_mypy_dependencies.py
index e14f701..8454889 100755
--- a/src/dependency_update_pre_commit/update_mypy_dependencies.py
+++ b/src/dependency_update_pre_commit/update_mypy_dependencies.py
@@ -481,7 +481,10 @@ def main() -> None:
         "--optional-extras",
         type=str,
         default="",
-        help="Comma-separated list of optional-dependencies extras to include for type checking (e.g., 'inference_cpu' or 'inference_cpu,test_extras')",
+        help=(
+            "Comma-separated list of optional-dependencies extras to include for type "
+            "checking (e.g., 'inference_cpu' or 'inference_cpu,test_extras')"
+        ),
     )
     args = parser.parse_args()
 

From df1227a9fa8dc73f96402b9e16aa8f4fe941524f Mon Sep 17 00:00:00 2001
From: Lars Briem <lars.briem@platomo.de>
Date: Mon, 16 Feb 2026 09:39:08 +0100
Subject: [PATCH 10/10] OP#9364: Use top level import

---
 src/dependency_update_pre_commit/update_mypy_dependencies.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/dependency_update_pre_commit/update_mypy_dependencies.py b/src/dependency_update_pre_commit/update_mypy_dependencies.py
index 8454889..b26dd20 100755
--- a/src/dependency_update_pre_commit/update_mypy_dependencies.py
+++ b/src/dependency_update_pre_commit/update_mypy_dependencies.py
@@ -1,5 +1,6 @@
 #!/usr/bin/env python3
 
+import argparse
 import re
 import tomllib
 from abc import ABC, abstractmethod
@@ -472,8 +473,6 @@ def type_stubs_have_changed(actual: dict, to_compare: dict) -> bool:
 
 
 def main() -> None:
-    import argparse
-
     parser = argparse.ArgumentParser(
         description="Update mypy additional_dependencies in .pre-commit-config.yaml"
     )