-
Notifications
You must be signed in to change notification settings - Fork 8
Expand file tree
/
Copy pathPOPCORN.html
More file actions
3349 lines (3281 loc) · 178 KB
/
POPCORN.html
File metadata and controls
3349 lines (3281 loc) · 178 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>POP:CORN</title>
<script src="site_libs/header-attrs-2.30/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<script src="site.js" defer></script>
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-5300959-3', 'auto');
ga('send', 'pageview');
</script>
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<link rel="stylesheet" href="site.css" type="text/css" />
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
details > summary > p:only-child {
display: inline;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark the anchor link active (and if it's in a dropdown, also mark that active)
var dropdown = menuAnchor.closest('li.dropdown');
if (window.bootstrap) { // Bootstrap 4+
menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
} else { // Bootstrap 3
menuAnchor.parent().addClass('active');
dropdown.addClass('active');
}
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "\e259";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "\e258";
font-family: 'Glyphicons Halflings';
border: none;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
</head>
<body>
<div class="container-fluid main-container">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Ross-Ibarra Lab</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
</li>
<li>
<a href="people.html">People</a>
</li>
<li>
<a href="research.html">Research</a>
</li>
<li>
<a href="pubs.html">Publications</a>
</li>
<li>
<a href="https://github.com/RILAB/lab-docs">Lab Docs</a>
</li>
<li>
<a href="POPCORN.html">POP:CORN</a>
</li>
<li>
<a href="news.html">News</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
<h1 class="title toc-ignore"><a href="POP:CORN" class="uri">POP:CORN</a></h1>
</div>
<p>Science and a beverage on a Friday afternoon are a good combination. <a href="POP:CORN" class="uri">POP:CORN</a> is intended to be a low-key venue for people to get discuss papers and become familiar with a broader literature. Nobody presents or defends the papers. We assume everyone has read the paper (but you are welcome to come and listen and chat even if you haven’t!). We start by asking each person’s thoughts and questions about the paper, then jump right in to discussion. This allows for a very informal discussion, and with a beverage and friendly colleagues involved even the worst papers are much more manageable. Anyone is welcome to come and anyone can <a href="mailto:rossibarra@ucdavis.edu">suggest a paper</a>. There is no email list; articles are posted below along with the date. And no, I won’t tell you what <a href="POP:CORN" class="uri">POP:CORN</a> stands for, so don’t ask.</p>
<p>We meet Fridays at <a href="https://www.villagepizzaandpints.com">Pizza and Pints</a> at 3:30pm.</p>
<p>To be aware of any last-minute changes, please <a href="mailto:rossibarra@ucdavis.edu">email Jeff</a> to be added to the Slack channel.</p>
<p>Below are papers for Oct. 2013 and onward. For 2008-2013 papers see <a href="old_jclub.html">here</a>.</p>
<p>We’re proud of the growing list of journal clubs modelled on ours, including <a href="http://www.public.iastate.edu/~mhufford/HuffordLab/camp/camp.html">C.A.M.P.</a>, <a href="http://hagenetics.org/?cat=6">E.H.R.A.B.</a>, <a href="https://t.co/LYhSgcrgnZ">(Re)views</a>, <a href="https://github.com/sawers-rellan-labs/esfoyaza">esfoyaza</a>, <a href="http://jyanglab.com/jc/">Q.U.I.T.</a>, <a href="https://brandvainlab.wordpress.com/p-r-o-s-t/">p.r.o.s.t.</a>, <a href="https://github.com/arundurvasula/frydomics/blob/master/README.md">frydomics</a>, and <a href="https://www.cropevolution.org/reading.html">C.R.O.P.</a></p>
<!-- [Peer Rebrew](https://kevinabird.wixsite.com/kevinbird/peer-rebrew). -->
<!-- [EvolFri](http://evolfri.blogspot.com/), -->
<!-- [detox](http://beissingerlab.org/Detox/), -->
<!-- And no, I won't tell you what journal club stands for, so don't ask. -->
<!-- [Strütt et al preprint](https://www.biorxiv.org/content/10.1101/2024.06.11.598434v1.full.pdf) A generalized structured coalescent for purifying selection without recombination -->
<div id="section" class="section level2">
<h2>2026</h2>
<div id="may" class="section level3">
<h3>May</h3>
<div id="may-15" class="section level4">
<h4>May 15</h4>
<p><a href="https://academic.oup.com/mbe/article/43/2/msag020/8441737?login=false">Presgraves et al 2026</a> The evolutionary genomics of meiotic drive</p>
</div>
<div id="may-8" class="section level4">
<h4>May 8</h4>
<p><a href="https://onlinelibrary.wiley.com/doi/10.1111/mec.17359">McFarlane et al 2026</a> Selection leads to remarkable variability in the outcomes of hybridisation across replicate hybrid zones</p>
</div>
<div id="may-1" class="section level4">
<h4>May 1</h4>
<p><a href="mailto:jri@ucdavis.edu">Gaut et al 2026</a> What has population genomics told us about the dynamics of selection and plant adaptation?</p>
</div>
</div>
<div id="april" class="section level3">
<h3>April</h3>
<div id="april-24" class="section level4">
<h4>April 24</h4>
<p>Undergrad Research Conf, no <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="april-17" class="section level4">
<h4>April 17</h4>
<p><a href="https://www.pnas.org/doi/10.1073/pnas.2514371123">Mualim et al 2026</a> Large future genetic diversity losses are predicted from conservation indicators even with habitat protection</p>
</div>
<div id="april-10-double-feature" class="section level4">
<h4>April 10 <strong>DOUBLE FEATURE</strong></h4>
<p><a href="https://www.nature.com/articles/s43247-026-03224-5">Yue et al. 2026</a> Maize cultivation and forest collapse over five centuries in southern China</p>
<p><strong>AND</strong></p>
<p><a href="https://www.science.org/doi/full/10.1126/sciadv.adw9222">Somerville et al 2026</a> Multi-isotope analysis of mammal bones provides environmental context for the adoption of agriculture in the Tehuacan Valley of Mexico</p>
</div>
<div id="april-3" class="section level4">
<h4>April 3</h4>
<p><a href="https://www.biorxiv.org/content/10.64898/2026.03.03.709416v1">Zhang et al. preprint</a> Recovering signatures of archaic introgression using ancestral recombination graphs</p>
</div>
</div>
<div id="march" class="section level3">
<h3>March</h3>
<div id="mar-27" class="section level4">
<h4>Mar 27</h4>
<p>No <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="mar-20" class="section level4">
<h4>Mar 20</h4>
<p><a href="https://www.nature.com/articles/s41586-026-10229-9">Morris et al 2026</a> A sorghum pangenome reference improves global crop trait discovery</p>
</div>
<div id="mar-13" class="section level4">
<h4>Mar 13</h4>
<p><a href="https://www.biorxiv.org/content/10.64898/2026.03.04.709483v1">Jiang et al. Preprint</a> Phenotypic complexity determines the predictability of molecular convergence</p>
</div>
<div id="mar-6" class="section level4">
<h4>Mar 6</h4>
<p><a href="https://pubmed.ncbi.nlm.nih.gov/41082512/">Simons et al 2025</a> Simple scaling laws control the genetic architectures of human complex traits</p>
</div>
</div>
<div id="february" class="section level3">
<h3>February</h3>
<div id="feb-27" class="section level4">
<h4>Feb 27</h4>
<p>No <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="feb-20" class="section level4">
<h4>Feb 20</h4>
<p>No <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="feb-13" class="section level4">
<h4>Feb 13</h4>
<p><a href="https://www.biorxiv.org/content/10.64898/2026.02.01.703099v1">Tianlin et al preprint</a> The genetic architecture of local adaptation is historically contingent</p>
</div>
</div>
<div id="january" class="section level3">
<h3>January</h3>
<div id="jan-23" class="section level4">
<h4>Jan 23</h4>
<p><a href="https://www.biorxiv.org/content/10.64898/2025.12.19.695387v1">James and Lascoux preprint</a> The effect of genome organisation on selection efficiency in two contrasted plant species</p>
</div>
<div id="jan-16" class="section level4">
<h4>Jan 16</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1">Amundson et al preprint</a> A deep-time landscape of plant cis-regulatory sequence evolution</p>
</div>
</div>
</div>
<div id="section-1" class="section level2">
<h2>2025</h2>
<div id="december" class="section level3">
<h3>December</h3>
<div id="december-12" class="section level4">
<h4>December 12</h4>
<p><a href="https://www.nature.com/articles/s41467-025-64944-4">Baril, Pucetti, and Croll</a> Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen</p>
</div>
<div id="december-5" class="section level4">
<h4>December 5</h4>
<p><a href="https://www.authorea.com/doi/full/10.22541/au.175873518.81404075">Braasch, Harenčár, Swope preprint</a> Extremely fine-scale soil heterogeneity in a rare serpentine endemic plant shapes patterns of genetic diversity</p>
</div>
</div>
<div id="november" class="section level3">
<h3>November</h3>
<div id="november-28" class="section level4">
<h4>November 28</h4>
<p><a href="https://www.nature.com/articles/s41586-025-09703-7">Spence et al 2025</a> Specificity, length and luck drive gene rankings in association studies</p>
</div>
<div id="november-21" class="section level4">
<h4>November 21</h4>
<p><a href="http://www.genescape.org/uploads/7/2/2/0/72206611/grundler_etal_2025.pdf">Grundler et al 2025</a> A geographic history of human genetic ancestry</p>
</div>
<div id="november-14" class="section level4">
<h4>November 14</h4>
<p><a href="https://onlinelibrary.wiley.com/doi/10.1111/mec.70081">Lopez et al 2025</a> Museum Genomics Reveals Temporal Genetic Stasis and Global Genetic Diversity in Arabidopsis thaliana</p>
</div>
<div id="november-7" class="section level4">
<h4>November 7</h4>
<p><a href="https://www.pnas.org/doi/10.1073/pnas.2425691122">Slalov et al 2025</a> Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees</p>
</div>
</div>
<div id="october" class="section level3">
<h3>October</h3>
<div id="october-31" class="section level4">
<h4>October 31</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2025.05.16.654548v1.full.pdf">Mead et al preprint</a> Variation in responses to temperature across admixed genotypes of Populus trichocarpa × P. balsamifera predict geographic shifts in regions where hybrids are favored</p>
</div>
<div id="october-24" class="section level4">
<h4>October 24</h4>
<p>Jeff away</p>
</div>
<div id="october-17" class="section level4">
<h4>October 17</h4>
<p>Jeff away</p>
</div>
<div id="october-10" class="section level4">
<h4>October 10</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.12.09.627636v2">Carey et al preprint</a> An X-linked sex determination mechanism in cannabis and hop</p>
</div>
<div id="october-3" class="section level4">
<h4>October 3</h4>
<p><a href="https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011742">Brady et al 2025</a> Genetic and environmental influences on the distributions of three chromosomal drive haplotypes in maize</p>
</div>
</div>
<div id="september" class="section level3">
<h3>September</h3>
<div id="september-26" class="section level4">
<h4>September 26</h4>
<p><a href="https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70520">Kreiner 2025</a> The genetic architecture and spatiotemporal dynamics of adaptation across human-modified landscapes</p>
</div>
<div id="september-19" class="section level4">
<h4>September 19</h4>
<p><a href="https://academic.oup.com/mbe/article/42/3/msaf047/8052716">Roberts et al 2025</a> K-mer-based Approaches to Bridging Pangenomics and Population Genetics</p>
</div>
<div id="september-12" class="section level4">
<h4>September 12</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2025.01.31.635908v1">Piri et al preprint</a> Higher order repeat structures reflect diverging evolutionary paths in maize centromeres and knobs</p>
</div>
<div id="september-5" class="section level4">
<h4>September 5</h4>
<p>Skipped</p>
</div>
</div>
<div id="august" class="section level3">
<h3>August</h3>
<div id="august-29" class="section level4">
<h4>August 29</h4>
<p><a href="https://www.science.org/doi/10.1126/science.adr1010">Anderson et al 2025</a> Adaptation and gene flow are insufficient to rescue a montane plant under climate change</p>
</div>
<div id="august-22" class="section level4">
<h4>August 22</h4>
<p><a href="https://royalsocietypublishing.org/doi/full/10.1098/rspb.2024.2443">Manin et al 2025</a> Ancient dog mitogenomes support the dual dispersal of dogs and agriculture into South America</p>
</div>
<div id="august-15" class="section level4">
<h4>August 15</h4>
<p>PopGen Course</p>
</div>
<div id="august-8" class="section level4">
<h4>August 8</h4>
<p>PopGen Course</p>
</div>
<div id="august-1" class="section level4">
<h4>August 1</h4>
<p><a href="https://www.sciencedirect.com/science/article/pii/S0305440325001165">Tushingham et al 2025</a> Biodiversity science of ancient fisheries: Archaeological indicators of eelgrass meadow health and indigenous (Wiyot) aquaculture, Humboldt Bay, CA</p>
</div>
</div>
<div id="july" class="section level3">
<h3>July</h3>
<div id="july-25" class="section level4">
<h4>July 25</h4>
<p><a href="https://www.nature.com/articles/s41586-025-09171-z">Herklotz et al 2025</a> Bimodal centromeres in pentaploid dogroses shed light on their unique meiosis</p>
</div>
<div id="july-18" class="section level4">
<h4>July 18</h4>
<p><a href="https://www.nature.com/articles/s42003-025-08227-0">Macharia et al 2025</a> Cowpea (Vigna unguiculata L. Walp.) landraces in Mozambique and neighbouring Southern African countries harbour genetic loci with potential for climate adaptation</p>
</div>
<div id="july-11" class="section level4">
<h4>July 11</h4>
<p><a href="https://www.nature.com/articles/s41467-025-60663-y">Jing et al 2025</a> Maximizing meiotic crossover rates reveals the map of Crossover Potential</p>
</div>
<div id="july-4" class="section level4">
<h4>July 4</h4>
<p>Independence Day</p>
</div>
</div>
<div id="june" class="section level3">
<h3>June</h3>
<div id="june-27" class="section level4">
<h4>June 27</h4>
<p><a href="https://www.nature.com/articles/s42003-025-08127-3">Wang et al 2025</a> DNA gains and losses in gigantic genomes do not track differences in transposable element-host silencing interactions</p>
</div>
<div id="june-20" class="section level4">
<h4>June 20</h4>
<p>No journal club</p>
</div>
<div id="june-13" class="section level4">
<h4>June 13</h4>
<p><a href="https://www.cell.com/current-biology/fulltext/S0960-9822(25)00577-9">Murray et al 2025</a>] Ancient genomes reveal demographic trajectories during the Classic Maya period</p>
</div>
<div id="june-6" class="section level4">
<h4>June 6</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2025.04.25.650679v1.full.pdf">Sakamoto and Yeaman preprint</a> Maintenance of polymorphism in spatially heterogeneous environments</p>
</div>
</div>
<div id="may-2" class="section level3">
<h3>May</h3>
<div id="may-30" class="section level4">
<h4>May 30</h4>
<p><a href="https://www.nature.com/articles/s41467-025-58021-z">Jiang et al 2025</a> Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change</p>
</div>
<div id="may-23" class="section level4">
<h4>May 23</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2025.02.13.638087v1">Schneemann and Welch preprint</a> Predicting hybrid fitness: the effects of ploidy and complex ancestry</p>
</div>
<div id="may-16" class="section level4">
<h4>May 16</h4>
<p><a href="https://www.science.org/doi/10.1126/science.adq0018">Kistler et al 2025</a> Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation</p>
</div>
<div id="may-9" class="section level4">
<h4>May 9</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.08.20.608876v1">Ragsdale preprint</a> Archaic introgression and the distribution of shared variation under stabilizing selection</p>
</div>
<div id="may-2-1" class="section level4">
<h4>May 2</h4>
<p>No journal club</p>
</div>
</div>
</div>
<div id="april-1" class="section level2">
<h2>April</h2>
<div id="april-25" class="section level4">
<h4>April 25</h4>
<p><a href="https://academic.oup.com/evolut/article/78/6/1025/7630243">Frayer et al 2024</a> Do genetic loci that cause reproductive isolation in the lab inhibit gene flow in nature?</p>
</div>
<div id="april-18" class="section level4">
<h4>April 18</h4>
<p><a href="https://academic.oup.com/genetics/article/229/3/iyaf003/7954791">Gibbs et al 2025</a> Trait genetic architecture and population structure determine model selection for genomic prediction in natural Arabidopsis thaliana populations</p>
</div>
<div id="april-11" class="section level4">
<h4>April 11</h4>
<p><a href="https://www.cell.com/trends/genetics/fulltext/S0168-9525(24)00131-8">Mohan et al 2024</a> A three-dimensional genomics view for speciation research</p>
</div>
<div id="april-4" class="section level4">
<h4>April 4</h4>
<p><a href="https://www.nature.com/articles/s41477-024-01899-2">Nie et al 2025</a> Molecular regulation and domestication of parthenocarpy in cucumber</p>
</div>
<div id="march-1" class="section level3">
<h3>March</h3>
<div id="mar-28" class="section level4">
<h4>Mar 28</h4>
<p>Spring break - No <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="mar-21" class="section level4">
<h4>Mar 21</h4>
<p>Jeff out in CDMX - no <a href="POP:CORN" class="uri">POP:CORN</a></p>
</div>
<div id="mar-14" class="section level4">
<h4>Mar 14</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.11.18.623787v3">Lopez-Valdivia et al. preprint</a> In silico analysis of the evolution of root phenotypes during maize domestication in Neolithic soils of Tehuacán</p>
</div>
<div id="mar-7" class="section level4">
<h4>Mar 7</h4>
<p>Maize meeting in St Louis!</p>
</div>
</div>
<div id="february-1" class="section level3">
<h3>February</h3>
<div id="feb-28" class="section level4">
<h4>Feb 28</h4>
<p><a href="https://link.springer.com/article/10.1007/s00239-024-10161-4">Schmutzer et al. 2024</a> Frustration can Limit the Adaptation of Promiscuous Enzymes Through Gene Duplication and Specialisation</p>
</div>
<div id="feb-21" class="section level4">
<h4>Feb 21</h4>
<p><a href="https://www.nature.com/articles/s41559-024-02591-6">Tournebize Chikhi 2024</a> Ignoring population structure in hominin evolutionary models can lead to the inference of spurious admixture events</p>
</div>
<div id="feb-14" class="section level4">
<h4>Feb 14</h4>
<p><a href="https://www.nature.com/articles/s41586-020-2467-6">Todesco et al 2020</a> Massive haplotypes underlie ecotypic differentiation in sunflowers</p>
</div>
<div id="feb-7" class="section level4">
<h4>Feb 7</h4>
<p>Jeff is in Canada - skipped</p>
</div>
</div>
<div id="january-1" class="section level3">
<h3>January</h3>
<div id="jan-31" class="section level4">
<h4>Jan 31</h4>
<p>No journal club</p>
</div>
<div id="jan-24" class="section level4">
<h4>Jan 24</h4>
<p><a href="https://www.cell.com/cell/fulltext/S0092-8674(24)01328-X">Arribas et al 2024</a> Transposable element exonization generates a reservoir of evolving and functional protein isoforms</p>
</div>
<div id="jan-17" class="section level4">
<h4>Jan 17</h4>
<p><a href="https://pmc.ncbi.nlm.nih.gov/articles/PMC11221428/">Li et al 2024</a> A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice</p>
</div>
</div>
<div id="jan-10" class="section level3">
<h3>Jan 10</h3>
<p>No journal club - skipped</p>
<div id="jan-3" class="section level4">
<h4>Jan 3</h4>
<p>No journal club - Happy new year!</p>
</div>
</div>
</div>
<div id="section-2" class="section level2">
<h2>2024</h2>
<div id="december-1" class="section level3">
<h3>December</h3>
<div id="dec-27" class="section level4">
<h4>Dec 27</h4>
<p>Winter holiday</p>
</div>
<div id="dec-20" class="section level4">
<h4>Dec 20</h4>
<p><a href="https://www.cell.com/cell/abstract/S0092-8674(24)01277-7">Ramos-Madrigal et al 2024</a> The genomic origin of early maize in eastern North America</p>
</div>
<div id="dec-13" class="section level4">
<h4>Dec 13</h4>
<p>Harvest day - no journal club</p>
</div>
<div id="dec-6" class="section level4">
<h4>Dec 6</h4>
<p>Harris 2007 (See Slack for Chapter PDF) Agriculture, Cultivation and Domestication: Exploring the Conceptual Framework of Early Food Production</p>
</div>
</div>
<div id="november-1" class="section level3">
<h3>November</h3>
<div id="nov-29" class="section level4">
<h4>Nov 29</h4>
<p>No journal club - Turkey Preservation Day</p>
</div>
<div id="nov-22" class="section level4">
<h4>Nov 22</h4>
<p><a href="https://www.nature.com/articles/s41467-021-24720-6">Deletre et al 2021</a> Kinship networks of seed exchange shape spatial patterns of plant virus diversity</p>
</div>
<div id="nov-15" class="section level4">
<h4>Nov 15</h4>
<p><a href="https://www.nature.com/articles/s41467-024-52612-y">Milesi et al 2024</a> Resilience of genetic diversity in forest trees over the Quaternary</p>
<p>With additional reading <a href="https://communities.springernature.com/posts/tree-population-genomics-a-story-of-10-years-of-research-and-10-million-years-of-evolution?channel_id=behind-the-paper">here</a></p>
</div>
<div id="nov-8" class="section level4">
<h4>Nov 8</h4>
<p>BAPG</p>
</div>
<div id="nov-1" class="section level4">
<h4>Nov 1</h4>
<p><a href="https://www.nature.com/articles/s41477-024-01807-8">Rainegeval et al 2024</a> Retrotransposon-driven environmental regulation of FLC leads to adaptive response to herbicide</p>
</div>
</div>
<div id="october-1" class="section level3">
<h3>October</h3>
<div id="oct-25" class="section level4">
<h4>Oct 25</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.09.17.613564v1">Huang et al. preprint</a> Varying recombination landscapes between individuals are driven by polymorphic transposable elements</p>
</div>
<div id="oct-18" class="section level4">
<h4>Oct 18</h4>
<p>No journal club</p>
</div>
<div id="oct-11" class="section level4">
<h4>Oct 11</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.09.20.614076v1">Baduel et al. preprint</a> Transposable elements are prevalent vectors of transgenerational epigenetic inheritance in nature</p>
</div>
<div id="oct-4" class="section level4">
<h4>Oct 4</h4>
<p><a href="https://www.nature.com/articles/s41467-024-52597-8?fbclid=IwZXh0bgNhZW0CMTEAAR2YM6nzDAD8I-DmjLEbJuuyQPt99IUIYy2A84WCZxnQwVb5JyQ20kqE9LQ_aem_Qk0nvfLtYTDyLYxA5Bl2Kw">Holland-Lulewicz et al. 2024</a> The initial spread of peaches across eastern North America was structured by Indigenous communities and ecologies</p>
</div>
</div>
<div id="september-1" class="section level3">
<h3>September</h3>
<div id="sept-27" class="section level4">
<h4>Sept 27</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.09.14.613021v1">Akbari et al. 2024</a> Pervasive findings of directional selection realize the promise of ancient DNA to elucidate human adaptation</p>
</div>
<div id="sept-20." class="section level4">
<h4>Sept 20.</h4>
<p><a href="https://www.nature.com/articles/s41586-024-07911-1">Bolognini et al. 2024</a> Recurrent evolution and selection shape structural diversity at the amylase locus.</p>
</div>
<div id="sept.-13." class="section level4">
<h4>Sept. 13.</h4>
<p><a href="https://www.nature.com/articles/s41556-024-01494-9">Eroglu et al. 2024</a> Noncanonical inheritance of phenotypic information by protein amyloids.</p>
</div>
<div id="sept-6" class="section level4">
<h4>Sept 6</h4>
<p><a href="https://www.nature.com/articles/s41576-023-00652-3">Feschotte 2023</a></p>
</div>
</div>
<div id="august-2" class="section level3">
<h3>August</h3>
<div id="august-23" class="section level4">
<h4>August 23</h4>
<p><a href="https://www.science.org/doi/full/10.1126/science.adi6549">Lin et al 2023</a> The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge</p>
</div>
<div id="august-9" class="section level4">
<h4>August 9</h4>
<p><a href="https://www.tandfonline.com/doi/full/10.1080/00438243.2022.2030792">Ritchey et al 2022</a> “The wind that shakes the barley: the role of East Asian cuisines on barley grain size”</p>
</div>
</div>
<div id="july-1" class="section level3">
<h3>July</h3>
<div id="july-5" class="section level4">
<h4>July 5</h4>
<p>No journal club</p>
</div>
</div>
<div id="june-1" class="section level3">
<h3>June</h3>
<div id="june-28" class="section level4">
<h4>June 28</h4>
<p><a href="https://academic.oup.com/genetics/advance-article-abstract/doi/10.1093/genetics/iyae082/7676102?redirectedFrom=fulltext">Lasky et al 2024</a> Estimating scale-specific and localized spatial patterns in allele frequency</p>
</div>
<div id="june-21" class="section level4">
<h4>June 21</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.06.14.599085v1">Tataru et al preprint</a> Fluctuating selection in a Monkeyflower hybrid zone</p>
</div>
<div id="june-14" class="section level4">
<h4>June 14</h4>
<p><a href="https://www.science.org/doi/10.1126/science.ade4487">Zhang et al 2024</a>Rice’s trajectory from wild to domesticated in East Asia</p>
</div>
<div id="june-7" class="section level4">
<h4>June 7</h4>
<p><a href="https://onlinelibrary.wiley.com/doi/full/10.1111/ele.14406">Usui & Angert 2024</a> Range expansion is both slower and more variable with rapid evolution across a spatial gradient in temperature</p>
</div>
</div>
<div id="may-3" class="section level3">
<h3>May</h3>
<div id="may-31-no-journal-club" class="section level4">
<h4>May 31 No journal club</h4>
</div>
<div id="may-24" class="section level4">
<h4>May 24</h4>
<p><a href="https://www.nature.com/articles/s41467-024-47015-y">Liu et al. 2024</a> Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations</p>
</div>
<div id="may-17" class="section level4">
<h4>May 17</h4>
<p><a href="https://academic.oup.com/plcell/article-abstract/36/4/840/7456361?redirectedFrom=fulltext">Jian et al. 2023</a> Forces driving transposable element load variation during Arabidopsis range expansion Get access</p>
</div>
<div id="may-10" class="section level4">
<h4>May 10</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.04.22.590609v1.full">Marsh and Johri preprint</a> Biases in ARG-based inference of historical population size in populations experiencing selection</p>
</div>
<div id="may-3-1" class="section level4">
<h4>May 3</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.04.02.587814v1">Nocchi et al preprint</a> Repeated global adaptation across plant species</p>
</div>
</div>
<div id="april-2" class="section level3">
<h3>April</h3>
<div id="april-18-1" class="section level4">
<h4>April 18</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.03.15.585102v1.full.pdf+html">Spiedel et al preprint</a> High-resolution genomic ancestry reveals mobility in early medieval Europe</p>
</div>
<div id="arpil-12" class="section level4">
<h4>Arpil 12</h4>
<p>no journal club</p>
</div>
<div id="april-5" class="section level4">
<h4>April 5</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.02.19.581063v1">de la Fuente Castro et al 2024</a> The genomic and cultural diversity of the Inka Qhapaq hucha ceremony in Chile and Argentina</p>
</div>
</div>
<div id="march-2" class="section level3">
<h3>March</h3>
<div id="march-29" class="section level4">
<h4>March 29</h4>
<p>No journal club</p>
</div>
<div id="march-22" class="section level4">
<h4>March 22</h4>
<p><a href="https://www.nature.com/articles/s41598-024-53010-6">Lanaud et al 2024</a> A revisited history of cacao domestication in pre-Columbian times revealed by archaeogenomic approaches</p>
</div>
<div id="march-15" class="section level4">
<h4>March 15</h4>
<p>No journal club</p>
</div>
<div id="march-8" class="section level4">
<h4>March 8</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2024.02.14.580345v1">Long et al 2024</a> Muller’s Ratchet in Action: The Erosion of Sexual Reproduction Genes in Domesticated Cassava (Manihot esculenta)</p>
</div>
<div id="march-1-1" class="section level4">
<h4>March 1</h4>
<p>No journal club – <a href="https://www.maizegdb.org/mgc/maizemeeting/2024">Maize meeting!</a></p>
</div>
</div>
<div id="february-2" class="section level3">
<h3>February</h3>
<div id="feb-23" class="section level4">
<h4>Feb 23</h4>
<p><a href="https://www.science.org/doi/10.1126/science.adg8028">Pironon, Ondo, et. al.</a> The global distribution of plants used by humans</p>
</div>
<div id="feb-16" class="section level4">
<h4>Feb 16</h4>
<p><a href="https://www.pnas.org/doi/full/10.1073/pnas.2208116120">Pope et al . 2023</a> The expansion of agriculture has shaped the recent evolutionary history of a specialized squash pollinator</p>
</div>
<div id="feb-9" class="section level4">
<h4>Feb 9</h4>
<p>No journal club</p>
</div>
<div id="feb-2" class="section level4">
<h4>Feb 2</h4>
<p><a href="http://m.genome.cshlp.org/content/32/8/1437.full.pdf">Löytynoja 2022</a> Thousands of human mutation clusters are explained by short-range template switching</p>
</div>
<div id="jan-26" class="section level4">
<h4>Jan 26</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2023.02.10.528022v2">Lind et al preprint</a> How useful is genomic data for predicting maladaptation to future climate?</p>
</div>
<div id="jan-19" class="section level4">
<h4>Jan 19</h4>
<p><a href="https://academic.oup.com/evlett/article/7/6/401/7298704">Delmore et al 2023</a> Structural genomic variation and migratory behavior in a wild songbird</p>
</div>
<div id="jan-12" class="section level4">
<h4>Jan 12</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2023.11.24.568563v1.full">Gautier et al 2023</a> Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam</p>
</div>
<div id="jan-5" class="section level4">
<h4>Jan 5</h4>
<p>no journal club</p>
</div>
</div>
</div>
<div id="section-3" class="section level2">
<h2>2023</h2>
<div id="december-2" class="section level3">
<h3>December</h3>
<div id="dec-29" class="section level4">
<h4>Dec 29</h4>
<p>Happy New Year’s!</p>
</div>
<div id="dec-22" class="section level4">
<h4>Dec 22</h4>
<p>No journal club</p>
</div>
<div id="dec-15" class="section level4">
<h4>Dec 15</h4>
<p><a href="https://www.pnas.org/doi/full/10.1073/pnas.2305208120">Zhang et al 2023</a> The lack of negative association between TE load and subgenome dominance in synthesized Brassica allotetraploids</p>
</div>
<div id="dec-8" class="section level4">
<h4>Dec 8</h4>
<p><a href="https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0291944">Rivera-Rodríguez et al 2023</a> Genomic diversity and population structure of teosinte (Zea spp.) and its conservation implications</p>
</div>
<div id="dec-1" class="section level4">
<h4>Dec 1</h4>
<p><a href="https://www.nature.com/articles/s41467-023-40052-z">Nigenda-Morales et al 2023</a> The genomic footprint of whaling and isolation in fin whale populations</p>
</div>
</div>
<div id="november-2" class="section level3">
<h3>November</h3>
<div id="nov-24" class="section level4">
<h4>Nov 24</h4>
<p>Gobble gobble gobble gobble gobble gobble</p>
</div>
<div id="nov-17" class="section level4">
<h4>Nov 17</h4>
<p><a href="https://nph.onlinelibrary.wiley.com/doi/full/10.1002/ppp3.10428">Diop et al 2023</a> Ethnolinguistic and genetic diversity of fonio (Digitaria exilis) in Senegal</p>
</div>
<div id="nov-10" class="section level4">
<h4>Nov 10</h4>
<p>Veteran’s Day - no journal club</p>
</div>
<div id="nov-3" class="section level4">
<h4>Nov 3</h4>
<p><a href="https://academic.oup.com/mbe/article/40/6/msad110/7158554">Igolkina et al 2023</a> Historical Routes for Diversification of Domesticated Chickpea Inferred from Landrace Genomics</p>
</div>
</div>
<div id="october-2" class="section level3">
<h3>October</h3>
<div id="oct-27" class="section level4">
<h4>Oct 27</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2022.10.23.513440v1">Lang et al 2022</a> Century-long timelines of herbarium genomes predict plant stomatal response to climate change</p>
</div>
<div id="oct-20" class="section level4">
<h4>Oct 20</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2023.09.27.559715v1.abstract">Castillo et al 2023</a> Predicting rapid adaptation in time from adaptation in space: a 30-year field experiment in marine snails</p>
</div>
<div id="oct-13" class="section level4">
<h4>Oct 13</h4>
<p>No journal club</p>
</div>
<div id="oct-6" class="section level4">
<h4>Oct 6</h4>
<p><a href="https://www.nature.com/articles/s41467-020-17302-5">Gordon et al. 2023</a> Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors</p>
</div>
</div>
<div id="september-2" class="section level3">
<h3>September</h3>
<div id="sep-29" class="section level4">
<h4>Sep 29</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2020.11.01.364349v1.full">Bontrager et al. 2020</a> Climate warming weakens local adaptation</p>
</div>
<div id="sep-22" class="section level4">
<h4>Sep 22</h4>
<p>No journal club – lab event</p>
</div>
<div id="sep-15" class="section level4">
<h4>Sep 15</h4>
<p><a href="https://www.pnas.org/doi/abs/10.1073/pnas.2208116120">Pope et al. 2023</a> The expansion of agriculture has shaped the recent evolutionary history of a specialized squash pollinator</p>
</div>
<div id="sep-8" class="section level4">
<h4>Sep 8</h4>
<p>No journal club - lab trip!</p>
</div>
<div id="sep-1" class="section level4">
<h4>Sep 1</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2023.08.08.551183v1">Engelhorn et al. 2023</a> Phenotypic variation in maize can be largely explained by genetic variation at transcription factor binding sites</p>
</div>
</div>
<div id="august-3" class="section level3">
<h3>August</h3>
<div id="aug-24" class="section level4">
<h4>Aug 24</h4>
<p><a href="https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0284136">Mueller et al. 2023</a> The taming of the weed: Developmental plasticity facilitated plant domestication</p>
</div>
<div id="aug-11" class="section level4">
<h4>Aug 11</h4>
<p><a href="https://onlinelibrary.wiley.com/doi/epdf/10.1002/ajpa.24656">Jorgensen et al. 2022</a> Genetic adaptations to potato starch digestionin the Peruvian Andes</p>
</div>
<div id="aug-4" class="section level4">
<h4>Aug 4</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2023.07.12.548689v1">Berube et al preprint</a> Teosinte Pollen Drive guides maize domestication and evolution by RNAi</p>
</div>
</div>
<div id="july-2" class="section level3">
<h3>July</h3>
<div id="july-28" class="section level4">
<h4>July 28</h4>
<p><a href="https://www.biorxiv.org/content/10.1101/2022.08.22.504706v2">Benegas et al preprint</a> DNA language models are powerful zero-shot predictors of genome-wide variant effects</p>
</div>
<div id="july-21" class="section level4">
<h4>July 21</h4>
<p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016716/">Hohenlohe et al. 2010</a> Using population genomics to detect selection in natural populations: key concpets and methodological considerations (Topic: detecting selection)</p>
</div>
<div id="july-14" class="section level4">
<h4>July 14</h4>
<p>No journal club</p>
</div>
<div id="jul-7" class="section level4">
<h4>Jul 7</h4>
<p><a href="https://academic.oup.com/genetics/article/202/4/1485/5930214">Peter 2016</a> Admixture, Population Structure, and F-Statistics (Topic: inferring population structure)</p>
</div>
</div>
<div id="june-2" class="section level3">
<h3>June</h3>
<div id="june-30" class="section level4">
<h4>June 30</h4>
<p><a href="https://academic.oup.com/genetics/article/215/1/193/5930485">Battey, Ralph, and Kern 2020</a> Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data (Topic: assumptions of population structure)</p>
</div>
<div id="june-23" class="section level4">
<h4>June 23</h4>
<p><a href="https://elifesciences.org/articles/66697">Hayward and Sella 2022</a> Polygenic adaptation after a sudden change in environment (Topic: polygenic adaptation)</p>
</div>
<div id="june-16" class="section level4">
<h4>June 16</h4>
<p>No journal club</p>
</div>
<div id="june-9" class="section level4">
<h4>June 9</h4>
<!-- [Wakeley and Aliacar 2001](https://pubmed.ncbi.nlm.nih.gov/11606561/) Gene Genealogies in a Metapopulation (Topic: applications of coalescence theory) -->
<p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6972798/">Mather 2020</a> A practical introduction to sequentially Markovian coalescent methods for estimating demographic history from genomic data (Topic: applications of coalescence theory)</p>
</div>
<div id="june-2-1" class="section level4">
<h4>June 2</h4>
<p><a href="https://www.hindawi.com/journals/abi/2008/257864/">Sethupathy and Hanenhali 2008</a> A tutorial of the poisson random field model in population penetics (Topic: diffusion theory)</p>
</div>
</div>
<div id="may-4" class="section level3">
<h3>May</h3>
<div id="may-26" class="section level4">
<h4>May 26</h4>
<p><a href="https://academic.oup.com/genetics/article/214/4/1019/5930513">Torres et al. 2020</a> The temporal dynamics of background selection in nonequilibrium populations (Topic: linked selection)</p>
</div>
<div id="may-5" class="section level4">
<h4>May 5</h4>
<p><a href="https://onlinelibrary.wiley.com/doi/full/10.1002/evl3.308">Kelly 2022</a> The genomic scale of fluctuating selection in a natural plant population</p>
</div>
</div>
<div id="april-6" class="section level3">
<h3>April</h3>
<div id="april-28" class="section level4">
<h4>April 28</h4>
<p>No journal club – visiting our awesome undergraduate researchers presenting at the <a href="https://urc.ucdavis.edu/conference">URSCA Conference</a></p>
</div>
<div id="april-21" class="section level4">
<h4>April 21</h4>
<p><a href="https://www.journals.uchicago.edu/doi/full/10.1086/679108">Muir et al. 2015</a> The Limited Contribution of Reciprocal Gene Loss to Increased Speciation Rates Following Whole-Genome Duplication.</p>
</div>
<div id="april-14" class="section level4">
<h4>April 14</h4>
<p><a href="https://www.biorxiv.org/content/biorxiv/early/2023/03/14/2023.03.13.532351.full.pdf">Silva and Van de Peer preprint</a> Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms</p>
</div>
<div id="april-7" class="section level4">