From 50ad0a0fd2ceec5c7adb4ee50b55cf226b89c0c5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Fri, 6 Feb 2026 14:20:22 +0100 Subject: [PATCH 01/15] dev: minor changes in README and python version tested --- README.md | 7 +- pyproject.toml | 2 +- uv.lock | 1881 +++++++++++++++++++++++++++++------------------- 3 files changed, 1138 insertions(+), 752 deletions(-) diff --git a/README.md b/README.md index b77b27e..38f5164 100644 --- a/README.md +++ b/README.md @@ -82,8 +82,11 @@ See [QUICKSTART.md](QUICKSTART.md) for setup and usage instructions. 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Generation on ESCAPE-OSSR + +on: + schedule: + # Run every Monday at 00:00 UTC + - cron: '0 0 * * 1' + workflow_dispatch: + +jobs: + analyze-and-create-issues: + runs-on: ubuntu-latest + timeout-minutes: 120 + + steps: + - name: Checkout code + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: '3.11' + + - name: Install uv + uses: astral-sh/setup-uv@v3 + with: + version: "latest" + + - name: Install dependencies + run: uv sync + + - name: Create output directories + run: | + mkdir -p pitfalls_outputs + mkdir -p issues_output + + - name: Run metacheck analysis + run: | + uv run sw-metadata-bot metacheck \ + --input assets/ossr_list_url.json \ + --pitfalls-output pitfalls_outputs \ + --analysis-output analysis_results.json + + - name: Run create-issues in dry-run mode + run: | + uv run sw-metadata-bot create-issues \ + --pitfalls-output-dir pitfalls_outputs \ + --issues-dir issues_output \ + --dry-run \ + --log-level INFO + + - name: Upload analysis results + if: always() + uses: actions/upload-artifact@v4 + with: + name: analysis-results + path: analysis_results.json + retention-days: 30 + + - name: Upload pitfalls files + if: always() + uses: actions/upload-artifact@v4 + with: + name: pitfalls-files + path: pitfalls_outputs/ + retention-days: 30 + + - name: Upload generated issues + if: always() + uses: actions/upload-artifact@v4 + with: + name: generated-issues + path: issues_output/ + retention-days: 30 + + - name: Generate summary + if: always() + run: | + echo "## Analysis Summary" >> $GITHUB_STEP_SUMMARY + echo "" >> $GITHUB_STEP_SUMMARY + if [ -f analysis_results.json ]; then + echo "### Analysis Results" >> $GITHUB_STEP_SUMMARY + echo "\`\`\`json" >> $GITHUB_STEP_SUMMARY + head -100 analysis_results.json >> $GITHUB_STEP_SUMMARY + echo "\`\`\`" >> $GITHUB_STEP_SUMMARY + fi + echo "" >> $GITHUB_STEP_SUMMARY + echo "### Output Artifacts" >> $GITHUB_STEP_SUMMARY + echo "- Analysis results: \`analysis_results.json\`" >> $GITHUB_STEP_SUMMARY + echo "- Pitfalls files: \`pitfalls-files/\`" >> $GITHUB_STEP_SUMMARY + echo "- Generated issues: \`generated-issues/\`" >> $GITHUB_STEP_SUMMARY diff --git a/assets/ossr_list_url.json b/assets/ossr_list_url.json new file mode 100644 index 0000000..8b61f90 --- /dev/null +++ b/assets/ossr_list_url.json @@ -0,0 +1,33 @@ +{ + "repositories": [ + "https://atlas.cern/updates/press-statement/13-tev-open-data", + "https://git.astron.nl/astron-sdc/escape-wp5/esap-deployment", + "https://git.astron.nl/ro/lofar", + "https://git.ligo.org/rhys.poulton/escape-datalake-shared-volume-writer", + "https://github.com/AMIGA-IAA/hcg-16", + "https://github.com/FairRootGroup/FairMQ/", + "https://github.com/IndexedConv/IndexedConv", + "https://github.com/R3BRootGroup/R3BRoot", + "https://github.com/aardk/jupyter-casa", + "https://github.com/cds-astro/aladin-lite", + "https://github.com/cds-astro/cds-moc-rust", + "https://github.com/cds-astro/mocpy", + "https://github.com/cds-astro/tutorials", + "https://github.com/cosimoNigro/agnpy", + "https://github.com/ctlearn-project/ctlearn", + "https://github.com/explore-platform/g-tomo", + "https://github.com/gammapy/gammapy", + "https://github.com/javierrico/gLike", + "https://gitlab.com/escape-ossr/eossr", + "https://gitlab.com/ska-telescope/sdc/sdc1-solution", + "https://gitlab.desy.de/jannisnecker/timewise_sup", + "https://gitlab.in2p3.fr/CTA-LAPP/HiPeRTA", + "https://gitlab.in2p3.fr/CTA-LAPP/RTA/HiPeRTA", + "https://gitlab.in2p3.fr/christopher.eckner/mlfermilatdwarfs/", + "https://gitlab.in2p3.fr/escape2020/wp3/eossr", + "https://gitlab.in2p3.fr/escape2020/wp3/ossr-curation", + "https://gitlab.in2p3.fr/escape2020/wp3/template_project_escape", + "https://gitlab.in2p3.fr/escape2020/wp3/zenodoci", + "https://gitlab.in2p3.fr/gammalearn/gammalearn" + ] +} \ No newline at end of file From 905b2fbae67daf0a8dd39144829254d05a018de2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Fri, 6 Feb 2026 15:27:44 +0100 Subject: [PATCH 03/15] ci: define github actions for other to use the bot in their own repo. --- .github/actions/README.md | 166 ++++++++++++++++++ .github/actions/create-issues/action.yml | 58 ++++++ .github/actions/metacheck-analysis/action.yml | 66 +++++++ .github/workflows/example-usage.yml | 48 +++++ .github/workflows/run-bot-analysis.yml | 41 ++--- 5 files changed, 350 insertions(+), 29 deletions(-) create mode 100644 .github/actions/README.md create mode 100644 .github/actions/create-issues/action.yml create mode 100644 .github/actions/metacheck-analysis/action.yml create mode 100644 .github/workflows/example-usage.yml diff --git a/.github/actions/README.md b/.github/actions/README.md new file mode 100644 index 0000000..5c83e53 --- /dev/null +++ b/.github/actions/README.md @@ -0,0 +1,166 @@ +# SW Metadata Bot - GitHub Action + +A GitHub Action to automatically analyze repository metadata quality and create issues with improvement suggestions. + +Part of the [CodeMetaSoft](https://w3id.org/codemetasoft) project to improve research software metadata quality. + +## Features + +- **Automated Metadata Analysis**: Detects metadata pitfalls using the metacheck tool +- **Issue Generation**: Creates detailed issues with improvement suggestions +- **Dry-run Support**: Review generated issues before they're posted +- **Flexible Input**: Analyze single repositories or process batch files +- **Artifact Support**: Save and review analysis results + +## Available Actions + +### `metacheck-analysis` + +Run metadata analysis on repositories to detect pitfalls. + +```yaml +uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 +with: + input: 'path/to/repos.json' # Required: URL or JSON file + pitfalls-output: 'pitfalls' # Optional: Output directory (default: pitfalls_outputs) + analysis-output: 'results.json' # Optional: Output file (default: analysis_results.json) + skip-somef: 'false' # Optional: Skip SoMEF execution (default: false) + threshold: '0.8' # Optional: SoMEF confidence threshold (default: 0.8) +``` + +**Outputs:** +- `pitfalls-output-dir`: Path to directory with pitfalls JSON-LD files +- `analysis-output-file`: Path to analysis summary JSON file + +### `create-issues` + +Create GitHub/GitLab issues based on analysis results. + +```yaml +uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 +with: + pitfalls-output-dir: 'pitfalls' # Required: Directory with pitfalls files + issues-dir: 'issues' # Optional: Output directory (default: issues_output) + dry-run: 'true' # Optional: Dry-run mode (default: true) + log-level: 'INFO' # Optional: Logging level (default: INFO) +``` + +**Outputs:** +- `issues-dir`: Path to directory with generated issue files + +## Usage Examples + +### Example 1: Analyze and Review Issues (Dry-run) + +```yaml +name: Metadata Analysis +on: + schedule: + - cron: '0 0 * * 1' # Weekly on Monday + workflow_dispatch: + +jobs: + analyze: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - name: Analyze metadata + uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 + id: analysis + with: + input: 'repos.json' + + - name: Generate issues + uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 + with: + pitfalls-output-dir: ${{ steps.analysis.outputs.pitfalls-output-dir }} + dry-run: 'true' + + - name: Upload results + uses: actions/upload-artifact@v4 + with: + name: analysis-results + path: | + issues_output/ + analysis_results.json +``` + +### Example 2: Analyze Single Repository + +```yaml +- name: Analyze single repo + uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 + with: + input: 'https://github.com/my-org/my-repo' + pitfalls-output: 'my-repo-analysis' +``` + +### Example 3: Create Issues in Production + +```yaml +- name: Create issues + uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 + with: + pitfalls-output-dir: 'pitfalls' + dry-run: 'false' # Actually create issues + log-level: 'DEBUG' +``` + +## Input File Format + +For batch analysis, provide a JSON file with repository URLs: + +```json +[ + "https://github.com/owner/repo1", + "https://github.com/owner/repo2", + "https://gitlab.com/group/repo3" +] +``` + +## Generated Output + +### Analysis Results (`analysis_results.json`) + +Summary statistics and metadata quality metrics. + +### Pitfalls Files (`pitfalls_outputs/`) + +JSON-LD files containing detailed metadata issues detected for each repository. + +### Issues Files (`issues_output/`) + +Generated issue bodies ready to be posted to repositories. Each file corresponds to a repository that needs improvements. + +## Authentication + +When creating actual issues (dry-run: false): +- **GitHub**: Set `GITHUB_TOKEN` environment variable +- **GitLab**: Set `GITLAB_TOKEN` environment variable + +```yaml +- name: Create issues + uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + GITLAB_TOKEN: ${{ secrets.GITLAB_TOKEN }} + with: + pitfalls-output-dir: 'pitfalls' + dry-run: 'false' +``` + +## Requirements + +- Python 3.10+ +- The action installs all dependencies via `uv` + +## License + +MIT + +## Questions? + +For issues, suggestions, or questions about the bot: +- GitHub: [codemetasoft/sw-metadata-bot](https://github.com/codemetasoft/sw-metadata-bot) +- Documentation: [CodeMetaSoft](https://w3id.org/codemetasoft) diff --git a/.github/actions/create-issues/action.yml b/.github/actions/create-issues/action.yml new file mode 100644 index 0000000..28aff01 --- /dev/null +++ b/.github/actions/create-issues/action.yml @@ -0,0 +1,58 @@ +name: 'SW Metadata Bot - Create Issues' +description: 'Create GitHub/GitLab issues based on metadata analysis results' +author: 'Tom François' + +inputs: + pitfalls-output-dir: + description: 'Directory containing pitfalls JSON-LD files from metacheck analysis' + required: true + issues-dir: + description: 'Directory to save issue bodies and reports' + required: false + default: 'issues_output' + dry-run: + description: 'Simulate issue creation without actually posting to repositories' + required: false + default: 'true' + log-level: + description: 'Logging level (DEBUG, INFO, WARNING, ERROR)' + required: false + default: 'INFO' + +outputs: + issues-dir: + description: 'Directory containing the generated issue files' + value: ${{ inputs.issues-dir }} + +runs: + using: 'composite' + steps: + - name: Checkout code + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: '3.11' + + - name: Install uv + uses: astral-sh/setup-uv@v3 + with: + version: "latest" + + - name: Install dependencies + shell: bash + run: uv sync + + - name: Create output directory + shell: bash + run: mkdir -p "${{ inputs.issues-dir }}" + + - name: Create issues + shell: bash + run: | + uv run sw-metadata-bot create-issues \ + --pitfalls-output-dir "${{ inputs.pitfalls-output-dir }}" \ + --issues-dir "${{ inputs.issues-dir }}" \ + --log-level "${{ inputs.log-level }}" \ + ${{ inputs.dry-run == 'true' && '--dry-run' || '' }} diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml new file mode 100644 index 0000000..19f7045 --- /dev/null +++ b/.github/actions/metacheck-analysis/action.yml @@ -0,0 +1,66 @@ +name: 'SW Metadata Bot - Metacheck Analysis' +description: 'Run metacheck analysis to detect metadata pitfalls in repositories' +author: 'Tom François' + +inputs: + input: + description: 'Repository URL or JSON file path containing repositories to analyze' + required: true + skip-somef: + description: 'Skip SoMEF execution and analyze existing SoMEF output files directly' + required: false + default: 'false' + pitfalls-output: + description: 'Directory to store pitfall JSON-LD files' + required: false + default: 'pitfalls_outputs' + analysis-output: + description: 'File path for summary results' + required: false + default: 'analysis_results.json' + threshold: + description: 'SoMEF confidence threshold (default: 0.8)' + required: false + default: '0.8' + +outputs: + pitfalls-output-dir: + description: 'Directory containing the pitfalls JSON-LD files' + value: ${{ inputs.pitfalls-output }} + analysis-output-file: + description: 'Path to the analysis results JSON file' + value: ${{ inputs.analysis-output }} + +runs: + using: 'composite' + steps: + - name: Checkout code + uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v5 + with: + python-version: '3.11' + + - name: Install uv + uses: astral-sh/setup-uv@v3 + with: + version: "latest" + + - name: Install dependencies + shell: bash + run: uv sync + + - name: Create output directory + shell: bash + run: mkdir -p "${{ inputs.pitfalls-output }}" + + - name: Run metacheck analysis + shell: bash + run: | + uv run sw-metadata-bot metacheck \ + --input "${{ inputs.input }}" \ + --pitfalls-output "${{ inputs.pitfalls-output }}" \ + --analysis-output "${{ inputs.analysis-output }}" \ + --threshold "${{ inputs.threshold }}" \ + ${{ inputs.skip-somef == 'true' && '--skip-somef' || '' }} diff --git a/.github/workflows/example-usage.yml b/.github/workflows/example-usage.yml new file mode 100644 index 0000000..aa22c72 --- /dev/null +++ b/.github/workflows/example-usage.yml @@ -0,0 +1,48 @@ +name: Example - Using SW Metadata Bot + +on: + workflow_dispatch: + +jobs: + analyze-repositories: + runs-on: ubuntu-latest + steps: + - name: Checkout code + uses: actions/checkout@v4 + + # Example 1: Analyze a single repository + - name: Analyze single repository + uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 + with: + input: 'https://github.com/example/repo' + pitfalls-output: 'single-repo-pitfalls' + analysis-output: 'single-repo-analysis.json' + + # Example 2: Analyze multiple repositories from a JSON file + - name: Analyze multiple repositories + uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 + id: analysis + with: + input: 'repos.json' + pitfalls-output: 'multi-repo-pitfalls' + analysis-output: 'multi-repo-analysis.json' + + # Example 3: Create issues in dry-run mode (default) + - name: Generate issues (dry-run) + uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 + with: + pitfalls-output-dir: ${{ steps.analysis.outputs.pitfalls-output-dir }} + issues-dir: 'generated-issues' + dry-run: 'true' + log-level: 'INFO' + + # Upload results for review + - name: Upload analysis results + if: always() + uses: actions/upload-artifact@v4 + with: + name: metadata-analysis + path: | + multi-repo-analysis.json + multi-repo-pitfalls/ + generated-issues/ diff --git a/.github/workflows/run-bot-analysis.yml b/.github/workflows/run-bot-analysis.yml index 103a346..c949510 100644 --- a/.github/workflows/run-bot-analysis.yml +++ b/.github/workflows/run-bot-analysis.yml @@ -15,38 +15,21 @@ jobs: - name: Checkout code uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v5 - with: - python-version: '3.11' - - - name: Install uv - uses: astral-sh/setup-uv@v3 - with: - version: "latest" - - - name: Install dependencies - run: uv sync - - - name: Create output directories - run: | - mkdir -p pitfalls_outputs - mkdir -p issues_output - - name: Run metacheck analysis - run: | - uv run sw-metadata-bot metacheck \ - --input assets/ossr_list_url.json \ - --pitfalls-output pitfalls_outputs \ - --analysis-output analysis_results.json + uses: ./.github/actions/metacheck-analysis + id: analysis + with: + input: assets/ossr_list_url.json + pitfalls-output: pitfalls_outputs + analysis-output: analysis_results.json - name: Run create-issues in dry-run mode - run: | - uv run sw-metadata-bot create-issues \ - --pitfalls-output-dir pitfalls_outputs \ - --issues-dir issues_output \ - --dry-run \ - --log-level INFO + uses: ./.github/actions/create-issues + with: + pitfalls-output-dir: ${{ steps.analysis.outputs.pitfalls-output-dir }} + issues-dir: issues_output + dry-run: 'true' + log-level: INFO - name: Upload analysis results if: always() From edb11c2f21b544a92303591115ac2d8da28dc0a4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Fri, 6 Feb 2026 15:46:59 +0100 Subject: [PATCH 04/15] ci: add scenario to test the action on PR --- .github/workflows/run-bot-analysis.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/run-bot-analysis.yml b/.github/workflows/run-bot-analysis.yml index c949510..a4f20e2 100644 --- a/.github/workflows/run-bot-analysis.yml +++ b/.github/workflows/run-bot-analysis.yml @@ -5,6 +5,12 @@ on: # Run every Monday at 00:00 UTC - cron: '0 0 * * 1' workflow_dispatch: + pull_request: + paths: + - '.github/actions/**' + - '.github/workflows/run-bot-analysis.yml' + - 'src/sw_metadata_bot/**' + - 'pyproject.toml' jobs: analyze-and-create-issues: From 59b6a5a9033e55b17fb3c779723699f77b9987f3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Fri, 6 Feb 2026 16:18:35 +0100 Subject: [PATCH 05/15] ci: add some explicit test to debug action --- .github/actions/metacheck-analysis/action.yml | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 19f7045..1530847 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -58,9 +58,19 @@ runs: - name: Run metacheck analysis shell: bash run: | + set -euo pipefail + if [[ "${{ inputs.skip-somef }}" == "true" ]]; then + SKIP_SOMEF="--skip-somef" + else + SKIP_SOMEF="" + fi + uv run sw-metadata-bot metacheck \ --input "${{ inputs.input }}" \ --pitfalls-output "${{ inputs.pitfalls-output }}" \ --analysis-output "${{ inputs.analysis-output }}" \ --threshold "${{ inputs.threshold }}" \ - ${{ inputs.skip-somef == 'true' && '--skip-somef' || '' }} + ${SKIP_SOMEF} + + echo "Pitfalls output dir: ${{ inputs.pitfalls-output }}" + ls -la "${{ inputs.pitfalls-output }}" || true From 67eb1f908cc1ed97acfda3a66f3e3881e04ffb78 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 16:02:58 +0100 Subject: [PATCH 06/15] ci: add explicit nltk data download for somef --- .github/actions/metacheck-analysis/action.yml | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 1530847..9bfd4b8 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -55,6 +55,16 @@ runs: shell: bash run: mkdir -p "${{ inputs.pitfalls-output }}" + - name: Download NLTK data for SoMEF + shell: bash + run: | + python -c " + import nltk + nltk.download('stopwords', download_dir='/usr/local/lib/nltk_data') + nltk.download('averaged_perceptron_tagger', download_dir='/usr/local/lib/nltk_data') + nltk.download('punkt', download_dir='/usr/local/lib/nltk_data') + " + - name: Run metacheck analysis shell: bash run: | From e49e4709aa94dc7785a82e6175bce70c72808bf1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 16:13:10 +0100 Subject: [PATCH 07/15] ci: fix missing "uv run" --- .github/actions/metacheck-analysis/action.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 9bfd4b8..c8ae4ab 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -58,7 +58,7 @@ runs: - name: Download NLTK data for SoMEF shell: bash run: | - python -c " + uv run python -c " import nltk nltk.download('stopwords', download_dir='/usr/local/lib/nltk_data') nltk.download('averaged_perceptron_tagger', download_dir='/usr/local/lib/nltk_data') From 053baa33a1a31eb9b6a2aa41324e8b495d211493 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 16:26:05 +0100 Subject: [PATCH 08/15] ci: fix NTLK folder --- .github/actions/metacheck-analysis/action.yml | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index c8ae4ab..3c39328 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -55,18 +55,24 @@ runs: shell: bash run: mkdir -p "${{ inputs.pitfalls-output }}" + - name: Create NLTK data directory + shell: bash + run: mkdir -p "${{ github.workspace }}/.nltk_data" + - name: Download NLTK data for SoMEF shell: bash run: | uv run python -c " import nltk - nltk.download('stopwords', download_dir='/usr/local/lib/nltk_data') - nltk.download('averaged_perceptron_tagger', download_dir='/usr/local/lib/nltk_data') - nltk.download('punkt', download_dir='/usr/local/lib/nltk_data') + nltk.download('stopwords', download_dir='${{ github.workspace }}/.nltk_data') + nltk.download('averaged_perceptron_tagger', download_dir='${{ github.workspace }}/.nltk_data') + nltk.download('punkt', download_dir='${{ github.workspace }}/.nltk_data') " - name: Run metacheck analysis shell: bash + env: + NLTK_DATA: "${{ github.workspace }}/.nltk_data" run: | set -euo pipefail if [[ "${{ inputs.skip-somef }}" == "true" ]]; then From 3175526fa1a8e3a3ba8b15ce0d0c843ddcab066b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 16:41:31 +0100 Subject: [PATCH 09/15] ci: add wordnet in nltk download --- .github/actions/metacheck-analysis/action.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 3c39328..558e284 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -64,9 +64,7 @@ runs: run: | uv run python -c " import nltk - nltk.download('stopwords', download_dir='${{ github.workspace }}/.nltk_data') - nltk.download('averaged_perceptron_tagger', download_dir='${{ github.workspace }}/.nltk_data') - nltk.download('punkt', download_dir='${{ github.workspace }}/.nltk_data') + nltk.download('wordnet', download_dir='${{ github.workspace }}/.nltk_data') " - name: Run metacheck analysis From dd5dcbfdce75da841a8ebe81b9b73038458cac0d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 16:55:39 +0100 Subject: [PATCH 10/15] ci: make a proper somef file --- .github/actions/metacheck-analysis/action.yml | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 558e284..c7a5642 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -59,13 +59,16 @@ runs: shell: bash run: mkdir -p "${{ github.workspace }}/.nltk_data" - - name: Download NLTK data for SoMEF + - name: Configure SoMEF before running analysis shell: bash + env: + NLTK_DATA: "${{ github.workspace }}/.nltk_data" run: | - uv run python -c " - import nltk - nltk.download('wordnet', download_dir='${{ github.workspace }}/.nltk_data') - " + uv run python -m nltk.downloader -d "$NLTK_DATA" wordnet + uv run python -m nltk.downloader -d "$NLTK_DATA" omw-1.4 + + export SOMEF_CONFIGURATION_FILE="${{ github.workspace }}/.somef_config.json" + uv run somef configure -a - name: Run metacheck analysis shell: bash From f2dbd36ec1d72a4d12aca26b1ca86e11fdd57b3f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Tue, 10 Feb 2026 17:02:03 +0100 Subject: [PATCH 11/15] ci: fixing SOMEF configuration file not used in the next job --- .github/actions/metacheck-analysis/action.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index c7a5642..16ad727 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -63,17 +63,17 @@ runs: shell: bash env: NLTK_DATA: "${{ github.workspace }}/.nltk_data" + SOMEF_CONFIGURATION_FILE: ".somef_config.json" run: | uv run python -m nltk.downloader -d "$NLTK_DATA" wordnet uv run python -m nltk.downloader -d "$NLTK_DATA" omw-1.4 - - export SOMEF_CONFIGURATION_FILE="${{ github.workspace }}/.somef_config.json" uv run somef configure -a - name: Run metacheck analysis shell: bash env: NLTK_DATA: "${{ github.workspace }}/.nltk_data" + SOMEF_CONFIGURATION_FILE: ".somef_config.json" run: | set -euo pipefail if [[ "${{ inputs.skip-somef }}" == "true" ]]; then From aac3f99b999c9dbd072efc3801383378961a5b00 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Wed, 11 Feb 2026 17:18:53 +0100 Subject: [PATCH 12/15] ci: use artefacts download and upload to pass results from analysis to issues creation jobs --- .github/actions/create-issues/action.yml | 7 +++++++ .github/actions/metacheck-analysis/action.yml | 9 +++++++++ 2 files changed, 16 insertions(+) diff --git a/.github/actions/create-issues/action.yml b/.github/actions/create-issues/action.yml index 28aff01..08b2055 100644 --- a/.github/actions/create-issues/action.yml +++ b/.github/actions/create-issues/action.yml @@ -44,6 +44,13 @@ runs: shell: bash run: uv sync + # Download the artifacts from Job 1 + - name: Download pitfalls artifacts + uses: actions/download-artifact@v4 + with: + name: pitfalls-outputs + path: pitfalls_outputs/ + - name: Create output directory shell: bash run: mkdir -p "${{ inputs.issues-dir }}" diff --git a/.github/actions/metacheck-analysis/action.yml b/.github/actions/metacheck-analysis/action.yml index 16ad727..4c1aa3c 100644 --- a/.github/actions/metacheck-analysis/action.yml +++ b/.github/actions/metacheck-analysis/action.yml @@ -91,3 +91,12 @@ runs: echo "Pitfalls output dir: ${{ inputs.pitfalls-output }}" ls -la "${{ inputs.pitfalls-output }}" || true + + - name: Upload pitfalls artifacts + uses: actions/upload-artifact@v4 + with: + name: pitfalls-outputs + path: pitfalls_outputs/ + retention-days: 1 # Clean up after 1 day + + From 6077ed1c43173f360a3e33f61f7bf8d184c04df8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Wed, 11 Feb 2026 17:19:13 +0100 Subject: [PATCH 13/15] ci: update the example for using github action --- .github/workflows/example-usage.yml | 43 ++++++++++++----------------- 1 file changed, 18 insertions(+), 25 deletions(-) diff --git a/.github/workflows/example-usage.yml b/.github/workflows/example-usage.yml index aa22c72..58c8e34 100644 --- a/.github/workflows/example-usage.yml +++ b/.github/workflows/example-usage.yml @@ -1,48 +1,41 @@ -name: Example - Using SW Metadata Bot +name: Example - Run SW Metadata Bot on This Repo on: workflow_dispatch: +permissions: + contents: read + issues: write + jobs: - analyze-repositories: + analyze-and-create-issues: runs-on: ubuntu-latest steps: - name: Checkout code uses: actions/checkout@v4 - # Example 1: Analyze a single repository - - name: Analyze single repository - uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 - with: - input: 'https://github.com/example/repo' - pitfalls-output: 'single-repo-pitfalls' - analysis-output: 'single-repo-analysis.json' - - # Example 2: Analyze multiple repositories from a JSON file - - name: Analyze multiple repositories + - name: Run metacheck analysis (current repo) uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 id: analysis with: - input: 'repos.json' - pitfalls-output: 'multi-repo-pitfalls' - analysis-output: 'multi-repo-analysis.json' + input: https://github.com/${{ github.repository }} + pitfalls-output: pitfalls_outputs + analysis-output: analysis_results.json - # Example 3: Create issues in dry-run mode (default) - - name: Generate issues (dry-run) + - name: Create issues (dry-run) uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 with: pitfalls-output-dir: ${{ steps.analysis.outputs.pitfalls-output-dir }} - issues-dir: 'generated-issues' + issues-dir: issues_output dry-run: 'true' - log-level: 'INFO' + log-level: INFO - # Upload results for review - - name: Upload analysis results + - name: Upload analysis artifacts if: always() uses: actions/upload-artifact@v4 with: - name: metadata-analysis + name: sw-metadata-bot-results path: | - multi-repo-analysis.json - multi-repo-pitfalls/ - generated-issues/ + analysis_results.json + pitfalls_outputs/ + issues_output/ From e32824dc9b6ef763596e2f1848d492e2ba4b8e9c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20Fran=C3=A7ois?= Date: Thu, 12 Feb 2026 14:49:04 +0100 Subject: [PATCH 14/15] feat: add entrypoint to test token in .env --- pyproject.toml | 1 + src/sw_metadata_bot/github_api.py | 71 ++++++++++++++ src/sw_metadata_bot/gitlab_api.py | 98 +++++++++++++++++++ src/sw_metadata_bot/main.py | 2 + src/sw_metadata_bot/verify_tokens.py | 138 +++++++++++++++++++++++++++ uv.lock | 87 +++++++++-------- 6 files changed, 359 insertions(+), 38 deletions(-) create mode 100644 src/sw_metadata_bot/verify_tokens.py diff --git a/pyproject.toml b/pyproject.toml index fbf8089..8b54764 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,6 +10,7 @@ authors = [ dependencies = [ "click>=8.3.1", "metacheck>=0.2.0", + "python-dotenv>=1.0.0", "requests>=2.32.5", ] diff --git a/src/sw_metadata_bot/github_api.py b/src/sw_metadata_bot/github_api.py index f732f5d..b8bae7a 100644 --- a/src/sw_metadata_bot/github_api.py +++ b/src/sw_metadata_bot/github_api.py @@ -54,6 +54,77 @@ def test_auth(self) -> bool: print(f"GitHub auth failed: {e}") return False + def verify_auth(self) -> dict: + """ + Verify authentication and return detailed information. + + Returns: + Dictionary with authentication details including user, scopes, and permissions. + """ + result = { + "platform": "GitHub", + "token_set": bool(self.token), + "authenticated": False, + "has_issues_permission": False, + "has_contents_permission": False, + "user": None, + "scopes": [], + "errors": [], + } + + if not self.token: + result["errors"].append("GitHub token not set") + return result + + if self.dry_run: + result["authenticated"] = True + result["user"] = "dry-run-mode" + result["has_issues_permission"] = True + result["has_contents_permission"] = True + return result + + try: + response = requests.get( + f"{self.base_url}/user", + headers={"Authorization": f"token {self.token}"}, + timeout=10, + ) + + if response.status_code == 401: + result["errors"].append("Invalid token (401 Unauthorized)") + return result + + if response.status_code == 403: + result["errors"].append("Token forbidden (403 Forbidden)") + return result + + response.raise_for_status() + + result["authenticated"] = True + user_data = response.json() + result["user"] = user_data.get("login") + + # Check token permissions via X-OAuth-Scopes header + scopes = response.headers.get("X-OAuth-Scopes", "").split(", ") + scopes = [s.strip() for s in scopes if s.strip()] + result["scopes"] = scopes + + # Check for required permissions + if "repo" in scopes or "public_repo" in scopes: + result["has_issues_permission"] = True + result["has_contents_permission"] = True + else: + # Check individual scopes + if "issues" in scopes or "write:issues" in scopes: + result["has_issues_permission"] = True + if "read:repo_hook" in scopes or "repo" in scopes: + result["has_contents_permission"] = True + + except Exception as e: + result["errors"].append(f"Error verifying GitHub token: {str(e)}") + + return result + def create_issue(self, repo_url: str, title: str, body: str) -> str: """ Create an issue on GitHub. diff --git a/src/sw_metadata_bot/gitlab_api.py b/src/sw_metadata_bot/gitlab_api.py index ed19a6b..3d4d638 100644 --- a/src/sw_metadata_bot/gitlab_api.py +++ b/src/sw_metadata_bot/gitlab_api.py @@ -60,6 +60,104 @@ def test_auth(self, host: str = "gitlab.com") -> bool: print(f"GitLab auth failed: {e}") return False + def verify_auth(self, host: str = "gitlab.com") -> dict: + """ + Verify authentication and return detailed information. + + Returns: + Dictionary with authentication details including user, scopes, and permissions. + """ + result = { + "platform": "GitLab", + "host": host, + "token_set": bool(self.token), + "authenticated": False, + "has_issues_permission": False, + "has_contents_permission": False, + "user": None, + "scopes": [], + "errors": [], + } + + if not self.token: + result["errors"].append("GitLab token not set") + return result + + if self.dry_run: + result["authenticated"] = True + result["user"] = "dry-run-mode" + result["has_issues_permission"] = True + result["has_contents_permission"] = True + return result + + try: + base_url = self.get_base_url(host) + + # Test basic authentication + response = requests.get( + f"{base_url}/user", + headers={"PRIVATE-TOKEN": self.token}, + timeout=10, + ) + + if response.status_code == 401: + result["errors"].append("Invalid token (401 Unauthorized)") + return result + + if response.status_code == 403: + result["errors"].append("Token forbidden (403 Forbidden)") + return result + + response.raise_for_status() + + result["authenticated"] = True + user_data = response.json() + result["user"] = user_data.get("username") + + # GitLab doesn't expose token scopes via API like GitHub does + # Instead, we test specific permissions by making test API calls + + # Test read_repository permission (can list user projects) + try: + test_response = requests.get( + f"{base_url}/projects", + headers={"PRIVATE-TOKEN": self.token}, + params={"membership": "true", "per_page": 1}, + timeout=10, + ) + if test_response.status_code == 200: + result["has_contents_permission"] = True + except Exception: + pass + + # Test api/write permission (can we access issues endpoint) + # Note: We can't actually test write without creating an issue + # But read access to issues endpoint suggests api scope + try: + test_response = requests.get( + f"{base_url}/issues", + headers={"PRIVATE-TOKEN": self.token}, + params={"scope": "assigned_to_me", "per_page": 1}, + timeout=10, + ) + if test_response.status_code == 200: + result["has_issues_permission"] = True + except Exception: + pass + + # Add note about GitLab scope detection + if not result["scopes"]: + result["scopes"] = ["(GitLab doesn't expose token scopes via API)"] + if result["has_contents_permission"]: + result["scopes"].append("✓ can read repositories") + if result["has_issues_permission"]: + result["scopes"].append("✓ can access issues") + + except Exception as e: + result["errors"].append(f"Error verifying GitLab token: {str(e)}") + + return result + def create_issue(self, repo_url: str, title: str, body: str) -> str: """ Create an issue on GitLab. diff --git a/src/sw_metadata_bot/main.py b/src/sw_metadata_bot/main.py index a9d1b12..2f745eb 100644 --- a/src/sw_metadata_bot/main.py +++ b/src/sw_metadata_bot/main.py @@ -4,6 +4,7 @@ from .create_issues import create_issues_command from .metacheck_wrapper import metacheck_command +from .verify_tokens import verify_tokens_command @click.group() @@ -14,6 +15,7 @@ def cli(): cli.add_command(metacheck_command, name="metacheck") cli.add_command(create_issues_command, name="create-issues") +cli.add_command(verify_tokens_command, name="verify-tokens") def main(): diff --git a/src/sw_metadata_bot/verify_tokens.py b/src/sw_metadata_bot/verify_tokens.py new file mode 100644 index 0000000..71cd33b --- /dev/null +++ b/src/sw_metadata_bot/verify_tokens.py @@ -0,0 +1,138 @@ +"""Token verification command - check if tokens have correct permissions.""" + +from pathlib import Path + +import click +from dotenv import load_dotenv + +from . import github_api, gitlab_api + + +@click.command() +@click.option( + "--github", + is_flag=True, + default=False, + help="Check GitHub token only.", +) +@click.option( + "--gitlab", + is_flag=True, + default=False, + help="Check GitLab token only.", +) +@click.option( + "--json", + "output_json", + is_flag=True, + default=False, + help="Output results as JSON.", +) +def verify_tokens_command(github: bool, gitlab: bool, output_json: bool): + """Verify that tokens are set and have correct permissions.""" + # Load .env file if it exists + env_path = Path.cwd() / ".env" + if env_path.exists(): + load_dotenv(env_path) + click.echo(f"ℹ️ Loaded environment from {env_path}\n", err=False) + + results = [] + + # Check GitHub if not specifically asking for GitLab only + if not gitlab or github: + try: + gh_api = github_api.GitHubAPI() + results.append(gh_api.verify_auth()) + except ValueError as e: + results.append( + { + "platform": "GitHub", + "token_set": False, + "authenticated": False, + "has_issues_permission": False, + "has_contents_permission": False, + "user": None, + "scopes": [], + "errors": [str(e)], + } + ) + + # Check GitLab if not specifically asking for GitHub only + if not github or gitlab: + try: + gl_api = gitlab_api.GitLabAPI() + results.append(gl_api.verify_auth()) + except ValueError as e: + results.append( + { + "platform": "GitLab", + "host": "gitlab.com", + "token_set": False, + "authenticated": False, + "has_issues_permission": False, + "has_contents_permission": False, + "user": None, + "scopes": [], + "errors": [str(e)], + } + ) + + if output_json: + import json + + click.echo(json.dumps(results, indent=2)) + return + + # Pretty print results + click.echo("\n" + "=" * 60) + click.echo("Token Verification Results") + click.echo("=" * 60 + "\n") + + all_valid = True + + for result in results: + platform = result["platform"] + click.echo(f"📊 {platform}") + click.echo(f" Token set: {'✅ Yes' if result['token_set'] else '❌ No'}") + + if result["token_set"]: + click.echo( + f" Authenticated: {'✅ Yes' if result['authenticated'] else '❌ No'}" + ) + + if result["authenticated"]: + click.echo(f" User: {result['user']}") + if result.get("scopes"): + click.echo(f" Scopes: {', '.join(result['scopes'])}") + click.echo( + f" Issues permission: {'✅ Yes' if result['has_issues_permission'] else '⚠️ No'}" + ) + click.echo( + f" Contents permission: {'✅ Yes' if result['has_contents_permission'] else '⚠️ No'}" + ) + + if result.get("errors"): + click.echo(" ⚠️ Warnings:") + for error in result["errors"]: + click.echo(f" - {error}") + else: + click.echo(" ❌ 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b/.github/workflows/example-usage.yml @@ -15,7 +15,7 @@ jobs: uses: actions/checkout@v4 - name: Run metacheck analysis (current repo) - uses: codemetasoft/sw-metadata-bot/.github/actions/metacheck-analysis@v1 + uses: SoftwareUnderstanding/sw-metadata-bot/.github/actions/metacheck-analysis@v1 id: analysis with: input: https://github.com/${{ github.repository }} @@ -23,7 +23,7 @@ jobs: analysis-output: analysis_results.json - name: Create issues (dry-run) - uses: codemetasoft/sw-metadata-bot/.github/actions/create-issues@v1 + uses: SoftwareUnderstanding/sw-metadata-bot/.github/actions/create-issues@v1 with: pitfalls-output-dir: ${{ steps.analysis.outputs.pitfalls-output-dir }} issues-dir: issues_output