TranslateSBML_RAVEN.m fails on Apple M4

[NantiaL]

Reading a simple model in .xml format using

model = importModel('modelxml');
returns the error:

Execution of script TranslateSBML_RAVEN as a function is not supported:
/Users/admin/RAVEN-main/software/libSBML/TranslateSBML_RAVEN.m

Error in importModel (line 142)
[modelSBML,errorMsg] = TranslateSBML_RAVEN(fileName,0,0,[1 1]);

I followed all the instructions provided for installing RAVEN, the COBRA Toolbox, and libSBML, as well as the solution mentioned here. However, I still get the same problem.

Here is how I installed and configured libSBML in MATLAB following the instructions:

1. ./configure --with-matlab=/Applications/MATLAB_R2024a.app
2. make
3. make install
4. addpath('/usr/local/lib')
   After that, I changed to the directory libsbml\src\binding\matlab, but running the buildSBML.m script was not successful.

[edkerk]

What OS are you running, on what type of system?

[NantiaL]

I'm running macOS on an Apple device with an M4 chip.

[simas232]

@NantiaL, could you please try to replace the existing libSBML functions (located in RAVEN/software/libSBML) with the following ones from the latest libSBML release? Just make sure that all files which begin with "TranslateSBML" and "OutputSBML" are renamed into "TranslateSBML_RAVEN" and "OutputSBML_RAVEN" correspondingly. Once you do this and run checkInstallation, you might get the warnings from the Security Center about the unknown binary files. To fix this, open the Security Center and grant the permissions to both TranslateSBML and OutputSBML. Upon this, checkInstallation should work fine.