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visualization_utils.py
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724 lines (593 loc) · 25.1 KB
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"""
Visualization utilities for model analysis and evaluation.
These functions create common plots for model evaluation and log them to MLflow.
"""
import os
import io
import base64
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
from sklearn.metrics import confusion_matrix, roc_curve, auc, precision_recall_curve
import torch
import mlflow
from pathlib import Path
from PIL import Image, ImageDraw, ImageFont
from typing import List, Dict, Any, Tuple, Optional
def get_text_size(draw, text, font):
"""
Get text size using the appropriate method based on Pillow version.
Compatible with both old (textsize) and new (textbbox) Pillow versions.
"""
try:
# New method for Pillow 10.0.0+
bbox = draw.textbbox((0, 0), text, font=font)
return bbox[2] - bbox[0], bbox[3] - bbox[1]
except AttributeError:
# Fallback for older Pillow versions
return draw.textsize(text, font=font)
def draw_bounding_boxes(
image: Image.Image,
detections: List[Dict[str, Any]],
confidence_threshold: float = 0.5,
box_thickness: int = 2,
font_size: int = 12
) -> Image.Image:
"""
Draw bounding boxes on an image for object detection results.
Args:
image: PIL Image to draw on
detections: List of detection dictionaries with 'box', 'class_name', 'confidence'
confidence_threshold: Minimum confidence to display detection
box_thickness: Thickness of bounding box lines
font_size: Font size for labels
Returns:
PIL Image with bounding boxes drawn
"""
# Create a copy of the image
img_with_boxes = image.copy()
draw = ImageDraw.Draw(img_with_boxes)
# Get image dimensions
img_width, img_height = image.size
print(f"Image size for bounding box drawing: {img_width}x{img_height}")
# Try to load a font, fall back to default if not available
try:
font = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans.ttf", font_size)
except (OSError, IOError):
try:
font = ImageFont.truetype("arial.ttf", font_size)
except (OSError, IOError):
font = ImageFont.load_default()
# Define colors for different classes (cycling through a predefined palette)
colors = [
"#FF0000", "#00FF00", "#0000FF", "#FFFF00", "#FF00FF", "#00FFFF",
"#800000", "#008000", "#000080", "#808000", "#800080", "#008080",
"#FFA500", "#FFC0CB", "#A52A2A", "#DDA0DD", "#98FB98", "#F0E68C"
]
# Keep track of class colors
class_colors = {}
color_index = 0
for detection in detections:
confidence = detection.get("confidence", 0)
if confidence < confidence_threshold * 100: # confidence is in percentage
continue
box = detection["box"]
class_name = detection.get("class_name", "Unknown")
print(f"Original box coordinates: {box}")
# Handle coordinate scaling and clamping
x1, y1, x2, y2 = box
# If coordinates are way outside image bounds, they might be scaled for a different size
# Common model output sizes are 800x800, so check if we need to scale down
if max(x1, x2) > img_width * 1.5 or max(y1, y2) > img_height * 1.5:
# Assume coordinates are for 800x800 and scale to actual image size
scale_x = img_width / 800.0
scale_y = img_height / 800.0
x1 = x1 * scale_x
y1 = y1 * scale_y
x2 = x2 * scale_x
y2 = y2 * scale_y
print(f"Scaled coordinates: [{x1}, {y1}, {x2}, {y2}]")
# Clamp coordinates to image bounds
x1 = max(0, min(x1, img_width - 1))
y1 = max(0, min(y1, img_height - 1))
x2 = max(0, min(x2, img_width - 1))
y2 = max(0, min(y2, img_height - 1))
# Ensure box has valid dimensions
if x2 <= x1 or y2 <= y1:
print(f"Invalid box dimensions after clamping: [{x1}, {y1}, {x2}, {y2}] - skipping")
continue
print(f"Final clamped coordinates: [{x1}, {y1}, {x2}, {y2}]")
# Assign color to class
if class_name not in class_colors:
class_colors[class_name] = colors[color_index % len(colors)]
color_index += 1
color = class_colors[class_name]
# Draw bounding box with multiple lines for thickness
for i in range(box_thickness):
draw.rectangle([x1 - i, y1 - i, x2 + i, y2 + i], outline=color, width=1)
# Prepare label text
label = f"{class_name}: {confidence:.1f}%"
# Get text size
text_width, text_height = get_text_size(draw, label, font)
# Calculate label background rectangle
label_bg_coords = [
x1,
y1 - text_height - 4,
x1 + text_width + 4,
y1
]
# Ensure label background is within image bounds
if label_bg_coords[1] < 0:
# If label would be above image, place it below the box
label_bg_coords[1] = y2
label_bg_coords[3] = y2 + text_height + 4
# Draw label background
draw.rectangle(label_bg_coords, fill=color)
# Draw label text
text_x = x1 + 2
text_y = label_bg_coords[1] + 2
draw.text((text_x, text_y), label, fill="white", font=font)
print(f"Drew bounding box for {class_name} at [{x1}, {y1}, {x2}, {y2}]")
return img_with_boxes
def draw_segmentation_mask(
image: Image.Image,
segmentation_mask: np.ndarray,
class_mapping: Dict[int, str],
alpha: float = 0.5
) -> Image.Image:
"""
Draw segmentation mask overlay on an image.
Args:
image: PIL Image to draw on
segmentation_mask: Numpy array with class indices
class_mapping: Mapping from class indices to class names
alpha: Transparency of the overlay
Returns:
PIL Image with segmentation overlay
"""
# Create a copy of the image
img_with_mask = image.copy()
# Convert to RGBA for transparency support
if img_with_mask.mode != 'RGBA':
img_with_mask = img_with_mask.convert('RGBA')
# Create color mapping for classes
colors = [
(255, 0, 0), (0, 255, 0), (0, 0, 255), (255, 255, 0), (255, 0, 255), (0, 255, 255),
(128, 0, 0), (0, 128, 0), (0, 0, 128), (128, 128, 0), (128, 0, 128), (0, 128, 128),
(255, 165, 0), (255, 192, 203), (165, 42, 42), (221, 160, 221), (152, 251, 152)
]
# Create overlay image
overlay = Image.new('RGBA', img_with_mask.size, (0, 0, 0, 0))
overlay_data = np.array(overlay)
# Apply colors to mask
for class_idx, class_name in class_mapping.items():
if class_idx == 0: # Skip background
continue
mask_coords = np.where(segmentation_mask == class_idx)
if len(mask_coords[0]) > 0:
color = colors[class_idx % len(colors)]
overlay_data[mask_coords[0], mask_coords[1]] = (*color, int(255 * alpha))
# Convert back to PIL and composite
overlay = Image.fromarray(overlay_data, 'RGBA')
result = Image.alpha_composite(img_with_mask, overlay)
return result.convert('RGB')
def pil_to_base64(image: Image.Image, format: str = "PNG") -> str:
"""
Convert a PIL Image to base64 string.
Args:
image: PIL Image
format: Image format (PNG, JPEG, etc.)
Returns:
Base64 encoded string
"""
buffer = io.BytesIO()
image.save(buffer, format=format)
buffer.seek(0)
img_base64 = base64.b64encode(buffer.getvalue()).decode()
return img_base64
def base64_to_pil(base64_string: str) -> Image.Image:
"""
Convert a base64 string to PIL Image.
Args:
base64_string: Base64 encoded image string
Returns:
PIL Image
"""
image_data = base64.b64decode(base64_string)
image = Image.open(io.BytesIO(image_data))
return image
def log_prediction_results(
job_id: str,
task_type: str,
prediction_result: Dict[str, Any],
processing_time: float = None
):
"""
Log prediction results for monitoring and debugging.
Args:
job_id: Job identifier
task_type: Type of ML task
prediction_result: The prediction results
processing_time: Time taken for prediction in seconds
"""
print(f"\n=== Prediction Results for Job {job_id} ===")
print(f"Task Type: {task_type}")
if processing_time:
print(f"Processing Time: {processing_time:.3f}s")
if task_type == "object_detection":
detections = prediction_result.get("detections", [])
print(f"Number of detections: {len(detections)}")
for i, detection in enumerate(detections):
class_name = detection.get("class_name", "Unknown")
confidence = detection.get("confidence", 0)
box = detection.get("box", [])
print(f" Detection {i+1}: {class_name} ({confidence:.1f}%) at {box}")
elif task_type == "image_classification":
predictions = prediction_result.get("predictions", [])
print(f"Number of classes predicted: {len(predictions)}")
for i, pred in enumerate(predictions[:5]): # Show top 5
class_name = pred.get("class_name", "Unknown")
confidence = pred.get("confidence", 0)
print(f" Prediction {i+1}: {class_name} ({confidence:.1f}%)")
elif task_type == "image_segmentation":
segmentation_type = prediction_result.get("segmentation_type", "semantic")
if segmentation_type == "semantic":
class_mapping = prediction_result.get("class_mapping", {})
print(f"Semantic segmentation with {len(class_mapping)} classes")
else:
instances = prediction_result.get("instances", [])
print(f"Instance segmentation with {len(instances)} instances")
print("=" * 50)
def create_confusion_matrix(y_true, y_pred, class_names=None, title="Confusion Matrix", normalize=False):
"""
Create and save a confusion matrix visualization.
Args:
y_true: Ground truth labels
y_pred: Predicted labels
class_names: List of class names
title: Plot title
normalize: Whether to normalize the confusion matrix
Returns:
Path to the saved confusion matrix image
"""
# Convert tensors to numpy arrays if needed
if isinstance(y_true, torch.Tensor):
y_true = y_true.cpu().numpy()
if isinstance(y_pred, torch.Tensor):
y_pred = y_pred.cpu().numpy()
# Get all unique labels from both true and predicted labels
unique_labels = np.unique(np.concatenate((y_true, y_pred)))
# If class_names are provided, ensure we have labels for all classes
if class_names:
# Create labels for all possible classes (0 to len(class_names)-1)
all_labels = list(range(len(class_names)))
# Compute confusion matrix with explicit labels parameter
cm = confusion_matrix(y_true, y_pred, labels=all_labels)
else:
# Use found unique labels
cm = confusion_matrix(y_true, y_pred, labels=unique_labels)
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
# Create figure
plt.figure(figsize=(10, 8))
sns.set(font_scale=1.2)
# Generate heatmap
sns.heatmap(
cm,
annot=True,
fmt='.2f' if normalize else 'd',
cmap='Blues',
xticklabels=class_names if class_names else "auto",
yticklabels=class_names if class_names else "auto"
)
plt.title(title, fontsize=15)
plt.ylabel('True label', fontsize=12)
plt.xlabel('Predicted label', fontsize=12)
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "confusion_matrix.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def create_loss_curve(train_losses, val_losses=None, title="Training and Validation Loss"):
"""
Create and save a loss curve visualization.
Args:
train_losses: List of training losses per epoch
val_losses: List of validation losses per epoch (optional)
title: Plot title
Returns:
Path to the saved loss curve image
"""
plt.figure(figsize=(10, 6))
epochs = range(1, len(train_losses) + 1)
plt.plot(epochs, train_losses, 'b-', label='Training Loss')
if val_losses:
plt.plot(epochs, val_losses, 'r-', label='Validation Loss')
plt.title(title, fontsize=15)
plt.xlabel('Epochs', fontsize=12)
plt.ylabel('Loss', fontsize=12)
plt.legend(fontsize=12)
plt.grid(True)
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "loss_curve.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def create_accuracy_curve(train_accuracies, val_accuracies=None, title="Training and Validation Accuracy"):
"""
Create and save an accuracy curve visualization.
Args:
train_accuracies: List of training accuracies per epoch
val_accuracies: List of validation accuracies per epoch (optional)
title: Plot title
Returns:
Path to the saved accuracy curve image
"""
plt.figure(figsize=(10, 6))
epochs = range(1, len(train_accuracies) + 1)
plt.plot(epochs, train_accuracies, 'g-', label='Training Accuracy')
if val_accuracies:
plt.plot(epochs, val_accuracies, 'y-', label='Validation Accuracy')
plt.title(title, fontsize=15)
plt.xlabel('Epochs', fontsize=12)
plt.ylabel('Accuracy (%)', fontsize=12)
plt.legend(fontsize=12)
plt.grid(True)
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "accuracy_curve.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def create_roc_curve(y_true, y_scores, class_names=None, title="ROC Curve"):
"""
Create and save a ROC curve visualization.
For multi-class, creates one-vs-rest ROC curves.
Args:
y_true: Ground truth labels (one-hot encoded for multi-class)
y_scores: Predicted scores/probabilities
class_names: List of class names
title: Plot title
Returns:
Path to the saved ROC curve image
"""
plt.figure(figsize=(10, 8))
# Convert tensors to numpy arrays if needed
if isinstance(y_true, torch.Tensor):
y_true = y_true.cpu().numpy()
if isinstance(y_scores, torch.Tensor):
y_scores = y_scores.cpu().numpy()
# Check if we have a single class scenario
unique_classes = np.unique(y_true)
if len(unique_classes) == 1:
plt.text(0.5, 0.5, f"All samples belong to class {unique_classes[0]}\nROC curve not applicable",
ha='center', va='center', fontsize=14)
plt.xlim([0.0, 1.0])
plt.ylim([0.0, 1.05])
plt.xlabel('False Positive Rate', fontsize=12)
plt.ylabel('True Positive Rate', fontsize=12)
plt.title(title, fontsize=15)
# Handle multi-class case
elif len(unique_classes) > 2:
n_classes = max(len(unique_classes), y_scores.shape[1] if y_scores.ndim > 1 else 2)
# Convert to one-hot encoding if not already
if y_true.ndim == 1:
y_true_onehot = np.eye(n_classes)[y_true]
else:
y_true_onehot = y_true
# For each class
for i in range(n_classes):
# Skip if no scores for this class
if y_scores.shape[1] <= i:
continue
fpr, tpr, _ = roc_curve(y_true == i, y_scores[:, i])
roc_auc = auc(fpr, tpr)
class_label = class_names[i] if class_names and i < len(class_names) else f"Class {i}"
plt.plot(fpr, tpr, lw=2, label=f'{class_label} (AUC = {roc_auc:.2f})')
else:
# Binary case
try:
fpr, tpr, _ = roc_curve(y_true, y_scores[:, 1] if y_scores.ndim > 1 else y_scores)
roc_auc = auc(fpr, tpr)
plt.plot(fpr, tpr, lw=2, label=f'ROC curve (AUC = {roc_auc:.2f})')
except (ValueError, IndexError):
plt.text(0.5, 0.5, "Insufficient data for ROC curve\nNeed both positive and negative samples",
ha='center', va='center', fontsize=14)
plt.plot([0, 1], [0, 1], 'k--', lw=2)
plt.plot([0, 1], [0, 1], 'k--', lw=2)
plt.xlim([0.0, 1.0])
plt.ylim([0.0, 1.05])
plt.xlabel('False Positive Rate', fontsize=12)
plt.ylabel('True Positive Rate', fontsize=12)
plt.title(title, fontsize=15)
plt.legend(loc="lower right", fontsize=10)
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "roc_curve.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def create_precision_recall_curve(y_true, y_scores, class_names=None, title="Precision-Recall Curve"):
"""
Create and save a precision-recall curve visualization.
Args:
y_true: Ground truth labels
y_scores: Predicted scores/probabilities
class_names: List of class names
title: Plot title
Returns:
Path to the saved precision-recall curve image
"""
plt.figure(figsize=(10, 8))
# Convert tensors to numpy arrays if needed
if isinstance(y_true, torch.Tensor):
y_true = y_true.cpu().numpy()
if isinstance(y_scores, torch.Tensor):
y_scores = y_scores.cpu().numpy()
# Check if we have a single class scenario
unique_classes = np.unique(y_true)
if len(unique_classes) == 1:
plt.text(0.5, 0.5, f"All samples belong to class {unique_classes[0]}\nPrecision-Recall curve not applicable",
ha='center', va='center', fontsize=14)
plt.xlim([0.0, 1.0])
plt.ylim([0.0, 1.05])
plt.xlabel('Recall', fontsize=12)
plt.ylabel('Precision', fontsize=12)
plt.title(title, fontsize=15)
# Handle multi-class case
elif len(unique_classes) > 2:
n_classes = max(len(unique_classes), y_scores.shape[1] if y_scores.ndim > 1 else 2)
# For each class
for i in range(n_classes):
# Skip if no scores for this class
if y_scores.shape[1] <= i:
continue
try:
precision, recall, _ = precision_recall_curve(y_true == i, y_scores[:, i])
pr_auc = auc(recall, precision)
class_label = class_names[i] if class_names and i < len(class_names) else f"Class {i}"
plt.plot(recall, precision, lw=2, label=f'{class_label} (AUC = {pr_auc:.2f})')
except ValueError as e:
# Skip if class has too few samples
print(f"Skipping PR curve for class {i}: {e}")
else:
# Binary case
try:
precision, recall, _ = precision_recall_curve(y_true, y_scores[:, 1] if y_scores.ndim > 1 else y_scores)
pr_auc = auc(recall, precision)
plt.plot(recall, precision, lw=2, label=f'PR curve (AUC = {pr_auc:.2f})')
except (ValueError, IndexError):
plt.text(0.5, 0.5, "Insufficient data for Precision-Recall curve\nNeed both positive and negative samples",
ha='center', va='center', fontsize=14)
plt.xlabel('Recall', fontsize=12)
plt.ylabel('Precision', fontsize=12)
plt.title(title, fontsize=15)
plt.legend(loc="best", fontsize=10)
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "precision_recall_curve.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def create_class_distribution_plot(class_counts, class_names=None, title="Class Distribution"):
"""
Create and save a bar chart showing class distribution.
Args:
class_counts: Dictionary or list of class counts
class_names: List of class names (optional if class_counts is a dict)
title: Plot title
Returns:
Path to the saved class distribution plot
"""
plt.figure(figsize=(12, 6))
if isinstance(class_counts, dict):
labels = list(class_counts.keys())
values = list(class_counts.values())
else:
values = class_counts
labels = class_names if class_names else [f"Class {i}" for i in range(len(class_counts))]
plt.bar(range(len(values)), values, align='center')
plt.xticks(range(len(values)), labels, rotation=45, ha='right')
plt.title(title, fontsize=15)
plt.xlabel('Class', fontsize=12)
plt.ylabel('Count', fontsize=12)
# Add count labels on top of each bar
for i, v in enumerate(values):
plt.text(i, v + 0.1, str(v), ha='center')
# Save plot to a temporary file
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
save_path = temp_dir / "class_distribution.png"
plt.tight_layout()
plt.savefig(save_path)
plt.close()
return str(save_path)
def log_all_visualizations_to_mlflow(
train_losses,
train_accuracies,
val_losses=None,
val_accuracies=None,
y_true=None,
y_pred=None,
y_scores=None,
class_counts=None,
class_names=None
):
"""
Create and log all visualizations to MLflow at once.
Args:
train_losses: List of training losses
train_accuracies: List of training accuracies
val_losses: List of validation losses (optional)
val_accuracies: List of validation accuracies (optional)
y_true: Ground truth labels (optional)
y_pred: Predicted labels (optional)
y_scores: Predicted scores/probabilities (optional)
class_counts: Dictionary or list of class counts (optional)
class_names: List of class names (optional)
"""
# Create a temporary directory for all visualizations
temp_dir = Path("temp")
temp_dir.mkdir(exist_ok=True)
# Dictionary to track all created plots
plots = {}
# Create and log loss curve
if train_losses:
loss_curve_path = create_loss_curve(train_losses, val_losses)
mlflow.log_artifact(loss_curve_path, "visualizations")
plots['loss_curve'] = loss_curve_path
# Create and log accuracy curve
if train_accuracies:
accuracy_curve_path = create_accuracy_curve(train_accuracies, val_accuracies)
mlflow.log_artifact(accuracy_curve_path, "visualizations")
plots['accuracy_curve'] = accuracy_curve_path
# Create and log confusion matrix
if y_true is not None and y_pred is not None:
confusion_matrix_path = create_confusion_matrix(y_true, y_pred, class_names)
mlflow.log_artifact(confusion_matrix_path, "visualizations")
plots['confusion_matrix'] = confusion_matrix_path
# Create and log ROC curve
if y_true is not None and y_scores is not None:
roc_curve_path = create_roc_curve(y_true, y_scores, class_names)
mlflow.log_artifact(roc_curve_path, "visualizations")
plots['roc_curve'] = roc_curve_path
# Also create and log precision-recall curve
pr_curve_path = create_precision_recall_curve(y_true, y_scores, class_names)
mlflow.log_artifact(pr_curve_path, "visualizations")
plots['precision_recall_curve'] = pr_curve_path
# Create and log class distribution
if class_counts:
class_dist_path = create_class_distribution_plot(class_counts, class_names)
mlflow.log_artifact(class_dist_path, "visualizations")
plots['class_distribution'] = class_dist_path
return plots
def cleanup_temp_files(file_paths):
"""
Remove temporary visualization files after they've been logged to MLflow.
Args:
file_paths: List or dictionary of file paths to clean up
"""
if isinstance(file_paths, dict):
paths = file_paths.values()
else:
paths = file_paths
for path in paths:
if os.path.exists(path):
os.remove(path)
# Try to remove temp directory if it's empty
try:
os.rmdir("temp")
except:
pass # Directory not empty or doesn't exist