LGN_processing_scripts/f_ShadedLinePlotbyDepth.m at master · ldaumail/LGN_processing_scripts · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
function f_ShadedLinePlotbyDepth(ASAbyDepth,corticaldepth,tm,N,offset,fill_deflection)

if nargin < 6
    fill_deflection = -1;
end

if size(ASAbyDepth,1) > size(ASAbyDepth,2)
    ASAbyDepth = ASAbyDepth';
end


%    scale means to values between 1 and -1 with basline at 0
%baslined_ASA  = bsxfun(@minus,ASAbyDepth, mean(ASAbyDepth(:,tm<0),2));
baslined_ASA = ASAbyDepth;
scalingfactor = max(max(abs(baslined_ASA),[],2));
scalingrange  = [-1 1];
scaled_ASA    = baslined_ASA .* 1/scalingfactor;

supra_color   = [248 202 161]./255;
gran_color    = [232 182 212]./255;
infra_color   = [170 200 211]./255;

% plot!
for depth = size(ASAbyDepth,1):-1:1

    x  = tm;
    bl = -offset*depth ;
    y  = scaled_ASA(depth,:) + bl;

    % basline
    baseline = repmat(bl,1,length(x));
    plot(x,baseline,'Color',[.8 .8 .8])


    % fill positive and negative curves
    sink = y;
    sink(sink>baseline) = bl;
    source = y;
    source(source<baseline) = bl;

    if fill_deflection == 0

     Hl=plot(x,y,'w'); hold on;


    elseif fill_deflection < 0
    mmfill(x,baseline,source,[0.95 0.95 0.95]), hold on

    if ~isempty(corticaldepth)
        if corticaldepth(depth) >= 0.6
            mmfill(x,baseline,sink,supra_color),hold on
        elseif corticaldepth(depth) <= 0.5 &&  corticaldepth(depth) >= 0.0
            mmfill(x,baseline,sink,gran_color),hold on
        else
            mmfill(x,baseline,sink,infra_color),hold on
        end
    else
        mmfill(x,baseline,sink,[0 0 0]), hold on
    end

    else
           mmfill(x,baseline,sink,[0.95 0.95 0.95]), hold on
    if ~isempty(corticaldepth)
        if corticaldepth(depth) >= 0.6
            mmfill(x,baseline,source,supra_color),hold on
        elseif corticaldepth(depth) <= 0.5 &&  corticaldepth(depth) >= 0.0
            mmfill(x,baseline,source,gran_color),hold on
        else
            mmfill(x,baseline,source,infra_color),hold on
        end
    else
        mmfill(x,baseline,source,[0 0 0]), hold on
    end
    end


    % timecourse
    if ~isempty(corticaldepth)
        if corticaldepth(depth) >= 0.6
            plot(x,y,'Color',supra_color,'LineWidth',1); hold on;
        elseif corticaldepth(depth) <= 0.5 &&  corticaldepth(depth) >= 0.0
            plot(x,y,'Color',gran_color,'LineWidth',1); hold on;
        else
            plot(x,y,'Color',infra_color,'LineWidth',1); hold on;
        end
        hold on;
    else

        plot(x,y,'Color',[.8 .8 .8],'LineWidth',1); hold on;
        hold on;

    end

    % label depth and n
    if ~isempty(N)
        if rem(N(depth),5) == 0
            ylabelh = text(min(x),bl,num2str(N(depth)),'HorizontalAlignment','right','FontName', 'Arial','FontSize', 8);
            pos  = get(ylabelh , 'position' );
            pos1 = pos - [10 0 0];
            set(ylabelh , 'position' , pos1 );
        end
    end
    %{
    if ~isempty(N)
        text(max(x),bl,num2str(N(depth)),'HorizontalAlignment','left','FontName', 'Arial','FontSize', 12); hold on;
    end
%}
end

%    add scale bar and label
ystr = sprintf('Scale Bar = %.2f %s\n', scalingfactor/2*offset);
xlabel(ystr,'fontsize',10);

% make pretty
xlim([min(tm) max(tm)]);
ylim([-1*offset*size(ASAbyDepth,1) -1*offset] + [-1*offset offset]);
plot([0 0], ylim,'Color',[0 148 68]./255,'linewidth',.8);
set(gca, ...
    'Box'         , 'off'     , ...
    'TickDir'     , 'out'     , ...
    'TickLength'  , [.02 .02] , ...
    'XMinorTick'  , 'off'      , ...
    'YMinorTick'  , 'off'      , ...
    'YGrid'       , 'off'      , ...
    'XColor'      , [0 0 0], ...
    'YColor'      , [0 0 0], ...
    'YTick'       , [], ...
    'LineWidth'   , 1         );

% axies labels and title
hYLabel = ylabel(ystr);
set( hYLabel                ,...
    'FontName'   , 'Arial' ,...
    'FontSize'   , 8           );
%{
titleHandle = get( gca ,'ylabel' );
pos  = get( titleHandle , 'position' );
pos1 = pos - [0 0.2 0];
set( titleHandle , 'position' , pos1 );
    %}
%hXLabel= xlabel('Time');
% set( hXLabel                ,...
%     'FontName'   , 'Arial' ,...
%     'FontSize'   , 12      );
end