Update applied_efp.rst

Author: Jacklaw441

doc/applied_efp.rst

@@ -32,7 +32,7 @@ The general procedure is to define the QM and EFP regions, fragment the residues
 EFP region, generate the starting fragment parameters, trim overlapping virtual/real atoms, 
 then create the final calculation input.
 
-.. image:: ../images/flowchart.pdf
+.. image:: ../images/flowchart.png
    :width: 500
 
 You will need a structure file (.g96), a topology file (.top), and a binary input from molecular dynamics (.tpr). A structure file can be extracted 
@@ -285,4 +285,4 @@ Time-Saving Tips
 In the case of FMO, the normal procedure is to repeat the EFP calculation for eight different BChl pigments. Fragments 
 can be reused between calculations if they come from the same snapshot. ie, bchl360-79002.g96 will need a handful of new 
 fragments than those created already for bchl361-79002, but the majority of EFP fragments are already made. This can save 
-a lot of time in repeated calculations.
+a lot of time in repeated calculations.