From 9bf53753290d334e1b5928eaef181f478242e899 Mon Sep 17 00:00:00 2001
From: Austin Richardson <accounts@agdr.org>
Date: Wed, 11 Mar 2026 11:32:58 -0700
Subject: [PATCH 1/3] (Hopefully) fix CI

---
 .github/workflows/tests.yml | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index b7cba3a..90de246 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -39,18 +39,19 @@ jobs:
       - name: version info
         run:  rustc --version; cargo --version;
 
+      - name: Install python headers
+        run: sudo apt-get update && sudo apt-get install -y python3-dev python3-pip python3-venv
+
       - name: Run all tests
         run: cargo test --features=python_test
 
-      - name: Install python headers
-        run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv
-
       - name: Install maturin
         run: |
           python3 -m venv venv
           . venv/bin/activate
-          pip3 install maturin downloads pytest
-          pip3 show maturin
+          pip install --upgrade pip
+          pip install maturin downloads pytest
+          pip show maturin
 
       - name: add library to venv
         run: |

From c5af62421494556ecc213f14c3b11291e61af119 Mon Sep 17 00:00:00 2001
From: Austin Richardson <accounts@agdr.org>
Date: Wed, 11 Mar 2026 11:49:24 -0700
Subject: [PATCH 2/3] Fix 2

---
 .github/workflows/test_ncbi.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/test_ncbi.yml b/.github/workflows/test_ncbi.yml
index c01204a..541fd38 100644
--- a/.github/workflows/test_ncbi.yml
+++ b/.github/workflows/test_ncbi.yml
@@ -21,14 +21,15 @@ jobs:
           override: true
 
       - name: Install python headers
-        run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv
+        run: sudo apt-get update && sudo apt-get install -y python3-dev python3-pip python3-venv
 
       - name: Install python dependencies
         run: |
           python3 -m venv venv
           . venv/bin/activate
-          pip3 install maturin downloads pytest
-          pip3 show maturin
+          pip install --upgrade pip
+          pip install maturin downloads pytest
+          pip show maturin
 
       - name: Add library to venv
         run: |

From 03dc732e221c410151231de5eb0b0df21e7800ba Mon Sep 17 00:00:00 2001
From: Austin Richardson <accounts@agdr.org>
Date: Wed, 11 Mar 2026 11:52:47 -0700
Subject: [PATCH 3/3] DRY up workflows

---
 .../actions/setup-python-bindings/action.yml  | 24 +++++++++++++++++++
 .github/workflows/test_ncbi.yml               | 17 ++-----------
 .github/workflows/tests.yml                   | 17 ++-----------
 3 files changed, 28 insertions(+), 30 deletions(-)
 create mode 100644 .github/actions/setup-python-bindings/action.yml

diff --git a/.github/actions/setup-python-bindings/action.yml b/.github/actions/setup-python-bindings/action.yml
new file mode 100644
index 0000000..57a1fa9
--- /dev/null
+++ b/.github/actions/setup-python-bindings/action.yml
@@ -0,0 +1,24 @@
+name: Setup Python bindings
+description: Install Python headers, create venv, install maturin, and build the taxonomy Python extension
+
+runs:
+  using: composite
+  steps:
+    - name: Install python headers
+      run: sudo apt-get update && sudo apt-get install -y python3-dev python3-pip python3-venv
+      shell: bash
+
+    - name: Install maturin
+      run: |
+        python3 -m venv venv
+        . venv/bin/activate
+        pip install --upgrade pip
+        pip install maturin downloads pytest
+        pip show maturin
+      shell: bash
+
+    - name: Add library to venv
+      run: |
+        . venv/bin/activate
+        maturin develop --features=python
+      shell: bash
diff --git a/.github/workflows/test_ncbi.yml b/.github/workflows/test_ncbi.yml
index 541fd38..b2ece7f 100644
--- a/.github/workflows/test_ncbi.yml
+++ b/.github/workflows/test_ncbi.yml
@@ -20,21 +20,8 @@ jobs:
           toolchain: stable
           override: true
 
-      - name: Install python headers
-        run: sudo apt-get update && sudo apt-get install -y python3-dev python3-pip python3-venv
-
-      - name: Install python dependencies
-        run: |
-          python3 -m venv venv
-          . venv/bin/activate
-          pip install --upgrade pip
-          pip install maturin downloads pytest
-          pip show maturin
-
-      - name: Add library to venv
-        run: |
-          . venv/bin/activate
-          maturin develop --features=python
+      - name: Setup Python bindings
+        uses: ./.github/actions/setup-python-bindings
 
       - name: Test Python bindings with latest NCBI taxonomy
         run: |
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 90de246..447513c 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -39,25 +39,12 @@ jobs:
       - name: version info
         run:  rustc --version; cargo --version;
 
-      - name: Install python headers
-        run: sudo apt-get update && sudo apt-get install -y python3-dev python3-pip python3-venv
+      - name: Setup Python bindings
+        uses: ./.github/actions/setup-python-bindings
 
       - name: Run all tests
         run: cargo test --features=python_test
 
-      - name: Install maturin
-        run: |
-          python3 -m venv venv
-          . venv/bin/activate
-          pip install --upgrade pip
-          pip install maturin downloads pytest
-          pip show maturin
-
-      - name: add library to venv
-        run: |
-          . venv/bin/activate
-          maturin develop --features=python
-
       - name: Run the python tests
         run: |
           . venv/bin/activate