coexpr/NAMESPACE at main · paliocha/coexpr · GitHub

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# Generated by roxygen2: do not edit by hand

export(TriSimilarity)
export(analyze_paralog_divergence)
export(as.TriSimilarity)
export(cache_clear)
export(cache_list)
export(calculate_ccs)
export(calculate_mi_clr)
export(calculate_ors)
export(calculate_pcc_mr)
export(collapse_orthologs)
export(diagnose_reference)
export(expand_reference_iteratively)
export(extractColumn)
export(extractColumns)
export(extractRows)
export(handle_multicopy_orthologs)
export(is.TriSimilarity)
export(loadTriSimilarity)
export(plot_ccs_vs_ors)
export(plot_ors_by_type)
export(plot_ors_distribution)
export(saveTriSimilarity)
export(summarize_conservation)
export(test_ors_significance)
exportClasses(TriSimilarity)
exportMethods("[")
exportMethods(as.matrix)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(extractColumn)
exportMethods(extractColumns)
exportMethods(extractRows)
exportMethods(show)
importFrom(Rcpp,sourceCpp)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(furrr,future_map_dbl)
importFrom(future,multisession)
importFrom(future,plan)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setValidity)
importFrom(methods,show)
importFrom(rlang,.data)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,head)
importFrom(utils,object.size)
useDynLib(coexpr, .registration = TRUE)