confs/bashrc_rackham at master · pmitev/confs · GitHub

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#export OMP_NUM_THREADS=1
#export MKL_SERIAL=yes
#export GOTO_NUM_THREADS=1

#if [ $HOSTNAME == "ppc" ]; then
# export LIBGL_ALWAYS_INDIRECT=y
#fi

#alias mc='source /usr/libexec/mc/mc-wrapper.sh'
#alias mc='source /crex/proj/staff/pmitev/nobackup/.PIXI_HOME/envs/mc/libexec/mc/mc-wrapper.sh'
alias mc='source /sw/generic/pixi-tools/envs/mc/libexec/mc/mc-wrapper.sh'
#alias ll='ls -l --group-directories-first'
alias srunP='srun -A staff          -t 15:00'
alias bashP='srun -A staff          -t 15:00 --x11 --pty /bin/bash'

alias srunR='srun -A staff          -t 15:00 -p devel'

#alias moduleon='module use /sw/arch/eb/modules/all/'
alias cal='cal -mw3'
alias sinteractive='salloc -A staff -t 6:00:00 --x11 srun --pty /bin/bash'
#alias stui='stui -job-columns-config "UserId,NumCPUs,Mem,NodeList,JobName++,RunTime,Comment"'

if [[ $(hostname) != "transit"* || $(hostname) != "bianca"* ]]; then
  export XDG_CACHE_HOME=/crex/proj/staff/pmitev/nobackup/XDG_CACHE_HOME

#  export UV_CACHE_DIR=/crex/proj/staff/pmitev/nobackup/.UV_CACHE_DIR
#  export UV_TOOL_DIR=/crex/proj/staff/pmitev/nobackup/.UV_TOOL_DIR

#  export PIXI_CACHE_DIR=/crex/proj/staff/pmitev/nobackup/.PIXI_CACHE_DIR
#  export PIXI_HOME=/crex/proj/staff/pmitev/nobackup/.PIXI_HOME
fi

export APPTAINER_CACHEDIR=/dev/shm/pmitev/.SINGULARITY_CACHEDIR
export APPTAINER_TMPDIR=/dev/shm/pmitev/.SINGULARITY_TMPDIR
mkdir -p $APPTAINER_CACHEDIR $APPTAINER_TMPDIR

export CONDA_ENVS_PATH=/crex/proj/staff/pmitev/nobackup/CONDA_ENVS
export CONDA_PKGS_DIRS=/crex/proj/staff/pmitev/nobackup/CONDA_PKGS

export OLLAMA_MODELS=/crex/proj/staff/pmitev/nobackup/ollama_models

#export NXF_HOME=/crex/proj/staff/pmitev/nobackup/NXF_HOME
#export NXF_SINGULARITY_CACHEDIR=/crex/proj/staff/pmitev/nobackup/NXF_SINGULARITY_CACHEDIR

#export UDOCKER_DIR=/crex/proj/staff/pmitev/udocker
#export PROOT_NO_SECCOMP=1

#export VGL_CLIENT=$DISPLAY
#export VGL_BINDIR=/usr/bin

function jiu()  { jobinfo -u ${1:-$USER} ; }
function scs()  { scontrol show jobid=${1:-1} ; }
function scsv() { scontrol show --details --details jobid=${1:-1} ; }
function scu()  { scontrol update jobid=${1:-1} ${2} ; }
function sj() { squeue -a -o"%.7i  %.8a %.9P %.8f  %50j  %.8u %.8T  %.10M  %.10l  %.10L  %.3D %.3C %.12R" -S j,-T,i -u ${1:-$USER} ; }
function userproj() {
    local U=${1:-$USER}
    sacctmgr -n list assoc where user=$U -P format=account | cat <(id -Gn $U | tr ' ' '\n') - | sort -Vu | grep -vP "($U|no_project)"
}
function sallocx() { salloc ${@} bash -c 'ssh -Y $(scontrol show hostnames | head -n 1)' ; }

# Remove a personal module cache, can be annoying when built on rackham but sitting on another system.
# # No special privileges required
# function purge-cache() { rm -rf $HOME/.lmod.d ; }