Describe the bug
CLI commands to load data fail if CRAM cache path does not exist.
To Reproduce
Steps to reproduce the behavior:
- Run
api/venv/bin/flask load-genes canonical_transcripts.tsv.gz \
omim_ensembl_refs.tsv.gz \
hgcn_genenames.tsv.gz \
gencode.v38.annotation.gtf.gz
- Wait for execution to halt with error
Exception: Provided CRAM cache path does not exist.
Expected behavior
Gene collections to be loaded into mongo db from given inputs.
Desktop (please complete the following information):
Distributor ID: Ubuntu
Description: Ubuntu 20.04.5 LTS
Release: 20.04
Codename: focal
Additional context
Loading backing data post data_prep processing.
Describe the bug
CLI commands to load data fail if CRAM cache path does not exist.
To Reproduce
Steps to reproduce the behavior:
Exception: Provided CRAM cache path does not exist.Expected behavior
Gene collections to be loaded into mongo db from given inputs.
Desktop (please complete the following information):
Additional context
Loading backing data post data_prep processing.