diff --git a/examples/freesurfer/freesurfer-args.json b/examples/freesurfer/freesurfer-args.json index 0e37565..53a4733 100644 --- a/examples/freesurfer/freesurfer-args.json +++ b/examples/freesurfer/freesurfer-args.json @@ -1,6 +1,6 @@ { - "image": "/vip/Home/API/reconall-example/INPUTS/ds001600/sub-1/anat/sub-1_T1w.nii.gz", - "results-directory": "/vip/Home/API/reconall-example/OUTPUTS/", - "options": "-all", - "license key": "/vip/Home/API/reconall-example/INPUTS/LICENSE.txt" -} \ No newline at end of file + "nifti": "/vip/Home/API/reconall-example/INPUTS/ds001600/sub-1/anat/sub-1_T1w.nii.gz", + "subjid": "sub-1_T1w", + "directives": "-all", + "license": "/vip/Home/API/reconall-example/INPUTS/LICENSE.txt" +} diff --git a/examples/freesurfer/freesurfer-recon-all.sh b/examples/freesurfer/freesurfer-recon-all.sh index c0d5f19..c8df2c4 100755 --- a/examples/freesurfer/freesurfer-recon-all.sh +++ b/examples/freesurfer/freesurfer-recon-all.sh @@ -3,6 +3,6 @@ python3 ./vip-cli.py \ --session reconall-example \ --input $(realpath ./inputs) \ - --pipeline "Freesurfer (recon-all)/0.3.8" \ + --pipeline "Freesurfer-Recon-all/7.3.1" \ --arguments freesurfer-args.json \ --api-key VIP_API_TOKEN diff --git a/examples/lcmodel/launch_lcmodel.ipynb b/examples/lcmodel/launch_lcmodel.ipynb index 3f4155e..66d130a 100644 --- a/examples/lcmodel/launch_lcmodel.ipynb +++ b/examples/lcmodel/launch_lcmodel.ipynb @@ -125,7 +125,7 @@ "outputs": [], "source": [ "# launch the execution and wait for it to finish\n", - "my_session.launch_pipeline(pipeline_id = \"LCModel/0.2-egi\", input_settings = input_settings)\n", + "my_session.launch_pipeline(pipeline_id = \"LCModel/0.6\", input_settings = input_settings)\n", "my_session.monitor_workflows()" ] },