Update packages to address GHSA-xxjr-mmjv-4gpg

.github/agents/extension-developer.md

@@ -104,9 +104,7 @@ class WikiTreeDataProvider implements vscode.TreeDataProvider<WikiItem> {
 
 ```typescript
 const disposables: vscode.Disposable[] = [];
-disposables.push(
-  vscode.commands.registerCommand('workspaceWiki.refreshTree', () => provider.refresh())
-);
+disposables.push(vscode.commands.registerCommand('workspaceWiki.refreshTree', () => provider.refresh()));
 return vscode.Disposable.from(...disposables);
 ```
 

docs/architecture/preview-controller.md

@@ -45,12 +45,21 @@ See also: [Settings Manager](./settings.md)
 ```mermaid
 sequenceDiagram
 	participant User as User
-	participant Tree as Workspace Wiki Tree
-	participant Controller as Preview/Open Controller
-	participant Editor as VS Code Editor
-	User->>Tree: Click file
-	Tree->>Controller: Request open (preview/editor)
-	Controller->>Editor: Open file (preview or editor)
+	participant Tree as Tree View
+	participant Handler as handleFileClick
+	participant Command as VS Code
+	User->>Tree: Single Click
+	Tree->>Handler: Trigger Click Handler
+	activate Handler
+	Handler->>Handler: Check Click Time
+	alt Single Click (< 500ms)
+		Handler->>Command: Execute Default Command
+		Command->>User: Open Preview
+	else Double Click (< 500ms apart)
+		Handler->>Command: Execute vscode.open
+		Command->>User: Open in Editor
+	end
+	deactivate Handler
 ```
 
-This diagram shows how user actions in the tree trigger file opening in preview or editor mode.
+This diagram shows the double-click detection flow: single clicks open files in preview mode (using the configured `openWith` command), while double clicks within 500ms open files in the full editor.

docs/architecture/scanner.md

@@ -56,11 +56,30 @@ See also: [Settings Manager](./settings.md)
 
 ```mermaid
 flowchart TD
-	A[Start Scan] --> B{Find Files}
-	B -->|Supported Extensions| C[Collect Metadata]
-	C --> D[Cache Metadata]
-	D --> E[Watch for Changes]
-	E -->|File Changed| B
+	A[Start Scan] --> B[Read Config]
+	B -->|Get supportedExtensions| C[Set Extension Patterns]
+	B -->|Get excludeGlobs| D[Set Exclude Patterns]
+	B -->|Check showIgnoredFiles| E{Read .gitignore?}
+	E -->|Yes| F[Parse .gitignore]
+	E -->|No| G[Find Files]
+	F --> H[Merge Exclude Patterns]
+	H --> G
+	C --> G
+	D --> G
+	G -->|Pattern Matching| I[Get File URIs]
+	I -->|README Filter| J[Handle README Matching]
+	I -->|Hidden Files Filter| K{showHiddenFiles?}
+	K -->|No| L[Exclude Dot Files]
+	K -->|Yes| M[Include All Files]
+	J --> N{Depth OK?}
+	N -->|Yes| O[Return Files]
+	N -->|No| P[Skip Deep Files]
+	P --> O
+	L --> N
+	M --> N
+	O --> Q[Setup File Watcher]
+	Q --> R[Watch for Changes]
+	R -->|File Changed| G
 ```
 
-This diagram shows the scanning process: finding files, collecting and caching metadata, and watching for changes.
+This diagram shows the core scanning process: reading configuration, matching file patterns, filtering by various rules, and watching for changes.

docs/architecture/settings.md

@@ -8,25 +8,25 @@ The Settings Manager reads and applies user configuration for the Workspace Wiki
 
 - `workspaceWiki.supportedExtensions`: File types to scan (default: `md`, `markdown`, `txt`).
     - If `md` or `markdown` is included, files named `README` (no extension, case-insensitive) are also included and treated as Markdown.
-- `workspaceWiki.excludeGlobs`: Patterns to exclude (e.g., `**/node_modules/**`).
-- `workspaceWiki.maxSearchDepth`: Limit scan depth for large repos.
-- `workspaceWiki.showIgnoredFiles`: Show files listed in .gitignore and excludeGlobs (default: false).
-- `workspaceWiki.showHiddenFiles`: Show hidden files/folders starting with a dot (default: false).
+- `workspaceWiki.excludeGlobs`: Glob patterns to exclude files and folders (default: `**/node_modules/**`, `**/.git/**`).
+- `workspaceWiki.maxSearchDepth`: Maximum directory depth to search for documentation files (default: `10`).
+- `workspaceWiki.showIgnoredFiles`: Show files listed in `.gitignore` and matched by `excludeGlobs` patterns (default: `false`).
+- `workspaceWiki.showHiddenFiles`: Show hidden files and folders starting with a dot (e.g., `.github`, `.env`) (default: `false`).
 
 ### File Opening & Display
 
-- `workspaceWiki.defaultOpenMode`: `preview` or `editor`.
-- `workspaceWiki.openWith`: Commands to use for opening different file types.
-- `workspaceWiki.directorySort`: How to sort files and folders (default: "files-first").
+- `workspaceWiki.defaultOpenMode`: `preview` or `editor` (default: `preview`).
+- `workspaceWiki.openWith`: Commands to use for opening different file types (default: `markdown.showPreview` for `.md`/`.markdown`, `vscode.open` for `.txt`).
+- `workspaceWiki.directorySort`: How to sort files and folders: `files-first`, `folders-first`, or `alphabetical` (default: `files-first`).
 
 ### Title Formatting
 
-- `workspaceWiki.acronymCasing`: Acronyms to preserve proper casing in file titles.
+- `workspaceWiki.acronymCasing`: Acronyms to preserve proper casing in file titles (default: `HTML`, `CSS`, `JS`, `TS`, `API`, `URL`, `JSON`, `XML`, `HTTP`, `HTTPS`, `REST`, `SQL`, `CSV`, `FHIR`).
 
 ### Sync & Auto-Reveal
 
-- `workspaceWiki.autoReveal`: Enable automatic file revelation in tree (default: `true`).
-- `workspaceWiki.autoRevealDelay`: Delay in milliseconds before revealing (default: `500`).
+- `workspaceWiki.autoReveal`: Automatically reveal the active file in the Workspace Wiki tree when the editor changes (default: `true`).
+- `workspaceWiki.autoRevealDelay`: Delay in milliseconds before revealing the active file (default: `500`). Set to `0` for immediate reveal.
 
 ## Example
 

docs/architecture/sync.md

@@ -79,12 +79,28 @@ See also: [Tree Data Provider](./tree-data-provider.md), [Settings](./settings.m
 
 ```mermaid
 sequenceDiagram
-	participant VSCode as VS Code
-	participant User as User
-	participant Tree as Workspace Wiki Tree
-	User->>VSCode: Change active editor
-	VSCode->>Tree: Notify active file
-	Tree->>Tree: Reveal file in tree
+	participant VSCode as VS Code Editor
+	participant Listener as Editor Change Listener
+	participant Config as Config Manager
+	participant Tree as Tree Provider
+	participant View as Tree View
+	VSCode->>Listener: onDidChangeActiveTextEditor
+	activate Listener
+	Listener->>Config: Get autoReveal Setting
+	alt autoReveal disabled
+		Listener-->>VSCode: Return
+	else autoReveal enabled
+		Listener->>Config: Get autoRevealDelay
+		alt autoRevealDelay > 0
+			Listener->>Listener: Wait (setTimeout)
+		end
+		Listener->>Tree: findNodeByPath
+		alt Node Found & Tree Visible
+			Listener->>View: reveal(node)
+			View->>VSCode: Highlight & Expand
+		end
+	end
+	deactivate Listener
 ```
 
-This diagram shows how the sync module listens for editor changes and reveals the corresponding file in the tree.
+This diagram shows how the sync module listens for active editor changes, checks configuration, and reveals the corresponding file in the tree with optional delay.

docs/architecture/tree-data-provider.md

@@ -91,20 +91,28 @@ Workspace Wiki
 
 See also: [Scanner/Indexer](./scanner.md)
 
-## TreeDataProvider Ordering Logic
+## Ordering Logic
 
 ```mermaid
 flowchart TD
-    A[All Files] --> B{Is Root?}
-    B -->|Yes| C[README.md First]
-    B -->|No| D[Folder Node]
-    C --> E[Other Root Docs A-Z]
-    D --> F{index.md Exists?}
-    F -->|Yes| G[Folder Named by index.md]
-    F -->|No| H[Folder Name]
-    G --> I[README.md in Folder]
-    G --> J[Other Files A-Z]
-    H --> J
+	A[All Nodes] --> B{Is README?}
+	B -->|Yes| C[Rank First]
+	B -->|No| D{Root Level?}
+	D -->|Yes| E[Apply Sort Mode]
+	D -->|No| F[Subfolder Node]
+	E -->|Get directorySort| G{Sort Mode}
+	G -->|files-first| H[Files before Folders]
+	G -->|folders-first| I[Folders before Files]
+	G -->|alphabetical| J[Alphabetical Order]
+	H --> K[Then Alphabetical]
+	I --> K
+	J --> K
+	K --> L[Final Sorted List]
+	F -->|index.md Exists| M[Folder Named by index]
+	F -->|No index.md| N[Use Folder Name]
+	M --> O[Children Sorted]
+	N --> O
+	O --> L
 ```
 
-This diagram shows how files are ordered and displayed in the tree.
+This diagram shows the node ordering logic: README files rank first, then root-level files/folders are sorted according to `directorySort` setting, then alphabetically by title within each type.

docs/usage/setup.md

@@ -18,11 +18,13 @@ The extension works out-of-the-box, but you can customize it via settings:
 
 - `workspaceWiki.supportedExtensions`: File types to include (default: `md`, `markdown`, `txt`).
 - `workspaceWiki.excludeGlobs`: Glob patterns to exclude (e.g., `**/node_modules/**`).
-- `workspaceWiki.defaultOpenMode`: `preview` or `editor`.
+- `workspaceWiki.directorySort`: How to sort files and folders (default: `files-first`).
+- `workspaceWiki.openWith`: Commands to use for opening different file types.
+- `workspaceWiki.maxSearchDepth`: Maximum directory depth to search (default: `10`).
 - `workspaceWiki.autoReveal`: Auto-reveal active file in tree (default: `true`).
 - `workspaceWiki.autoRevealDelay`: Delay before revealing active file in milliseconds (default: `500`).
-- `workspaceWiki.showIgnoredFiles`: Show files/folders listed in .gitignore and excludeGlobs (default: false).
-- `workspaceWiki.showHiddenFiles`: **Show hidden files and folders** (those starting with a dot, e.g. `.github`, `.env`) in the Workspace Wiki tree, unless excluded by .gitignore or excludeGlobs. Default is false (hidden files are not shown).
+- `workspaceWiki.showIgnoredFiles`: Show files/folders listed in .gitignore and excludeGlobs (default: `false`).
+- `workspaceWiki.showHiddenFiles`: Show hidden files and folders (those starting with a dot, e.g. `.github`, `.env`) in the Workspace Wiki tree, unless excluded by .gitignore or excludeGlobs (default: `false`).
 
 To change settings:
 
@@ -36,9 +38,9 @@ To change settings:
 {
 	"workspaceWiki.supportedExtensions": ["md", "markdown", "txt"],
 	"workspaceWiki.excludeGlobs": ["**/node_modules/**", "**/.git/**"],
-	"workspaceWiki.defaultOpenMode": "preview",
+	"workspaceWiki.directorySort": "files-first",
 	"workspaceWiki.autoReveal": true,
 	"workspaceWiki.autoRevealDelay": 500,
-	"workspaceWiki.showHiddenFiles": true
+	"workspaceWiki.showHiddenFiles": false
 }
 ```