Add a feature to visualise CIGAR string insertion and deletions#32
Open
helrick wants to merge 1 commit intoCompEpigen:mainfrom
Open
Add a feature to visualise CIGAR string insertion and deletions#32helrick wants to merge 1 commit intoCompEpigen:mainfrom
helrick wants to merge 1 commit intoCompEpigen:mainfrom
Conversation
Collaborator
|
@helrick thanks for the PR! I'll try to take a look at it in the coming week. Would you be able to share a bam file (at least a subset) and your config file so that I can test myself? |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Introduces a feature to visualise CIGAR string insertions and deletions to alignment tracks as referenced in #31
For example, by adding
cigar_insertion_threshold(default None) andinsertion_color(default "#4444FF"):and by adding
cigar_deletion_threshold(default None) anddeletion_color(default "#FF4444"):