Skip to content

Use OFN as the intermediate format more widely. #8

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
gouttegd wants to merge 2 commits into
base: main
Choose a base branch
from
Open

Use OFN as the intermediate format more widely. #8

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
83b48b0
Use OFN as the intermediate format more widely.
gouttegd Mar 15, 2026
9a7eaa0
Merge branch 'main' into use-ofn-as-intermediate-format
gouttegd Mar 17, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 5 additions & 5 deletions src/incatools/odk/templates/src/ontology/Makefile.jinja2
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -504,7 +504,7 @@ $(PRESEED): $(SRCMERGED)
$(SRCMERGED): $(EDIT_PREPROCESSED) $(OTHER_SRC)
$(ROBOT) remove --input $< --select imports --trim false \
merge $(foreach src, $(OTHER_SRC), --input $(src)) \
--output $@
convert --format ofn --output $@

$(EDIT_PREPROCESSED): $(SRC)
$(ROBOT) convert --input $< --format ofn --output $@
Expand Down Expand Up @@ -839,8 +839,7 @@ $(COMPONENTSDIR)/{{ component.filename }}: download-component-{{ component.filen
$(ROBOT) merge -i $(TMPDIR)/download-component-{{ component.filename }} \{% if component.make_base %}
remove {% for iri in component.base_iris %}--base-iri {{ iri }} \
{% endfor %}--axioms external --preserve-structure false --trim false \{% endif %}
annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) \
--output $@ ; \
$(ANNOTATE_CONVERT_FILE) ; \
fi

.PRECIOUS: $(COMPONENTSDIR)/{{ component.filename }}
Expand Down Expand Up @@ -905,7 +904,7 @@ $(MIRRORDIR)/{{ ont.id }}.owl: download-mirror-{{ ont.id }}
--base-iri {{ iri }} \{% endfor %}{% else %}
--base-iri $(OBOBASE)/{{ ont.id.upper() }} \{% endif %}
--axioms external --preserve-structure false --trim false \
convert {% else %}convert -i $(TMPDIR)/download-mirror-{{ ont.id }}.owl {% endif %}-o $@ ; \
convert {% else %}convert -i $(TMPDIR)/download-mirror-{{ ont.id }}.owl {% endif %}--format ofn -o $@ ; \
fi

{% if ont.is_large -%}
Expand All @@ -924,7 +923,8 @@ MERGE_MIRRORS = true

ifeq ($(MERGE_MIRRORS),true)
$(MIRRORDIR)/merged.owl: $(ALL_MIRRORS)
$(ROBOT) merge $(patsubst %, -i %, $^) {% if project.import_group.annotate_defined_by %}--annotate-defined-by true{% endif %} {% if project.import_group.base_merge_drop_equivalent_class_axioms %}remove --axioms equivalent --preserve-structure false {% endif %}-o $@
$(ROBOT) merge $(foreach mirror,$^,-i $(mirror)) {% if project.import_group.annotate_defined_by %}--annotate-defined-by true{% endif %} {% if project.import_group.base_merge_drop_equivalent_class_axioms %}remove --axioms equivalent --preserve-structure false {% endif %}\
convert --format ofn -o $@
.PRECIOUS: $(MIRRORDIR)/merged.owl
endif
{% endif -%}
Expand Down
Loading