GeoTransolver: Fix attention and turn off feature broadcasting.#1415
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GeoTransolver: Fix attention and turn off feature broadcasting.#1415
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Rebased into rc for 2.0.0 |
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Greptile SummaryFixed critical attention residual connection bug in GeoTransolver and disabled feature broadcasting to match expected tensor shapes. Key Changes:
Architecture Fix: Important Files Changed
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Ensure the volume example works out of the box.
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ktangsali
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* Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests
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* Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests
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* Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests
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commit fb4f159 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 23:11:04 2026 -0400 Adds the PhysicsNeMo-Mesh changes required for GLOBE 3D (NVIDIA#1483) * Adds the PhysicsNeMo-Mesh changes required for GLOBE 3D * Fixes docstring example for compute_cell_normals to reflect correct normal vector output in 2D case. * Refactor compute_cell_areas and compute_cell_normals functions to use match-case syntax for improved readability and maintainability. commit 219aca3 Author: Peter Harrington <48932392+pzharrington@users.noreply.github.com> Date: Wed Mar 11 17:23:16 2026 -0700 Fix window shift in pangu, fengwu (NVIDIA#1492) * Fix window shift in pangu, fengwu * changelog commit 26fcdce Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Wed Mar 11 20:20:33 2026 +0000 fix linting issues commit ca15f47 Author: Charlelie Laurent <claurent@nvidia.com> Date: Wed Mar 11 12:08:12 2026 -0700 Resolved conflicts in checkpoint.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 95eca0c Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Tue Mar 10 23:27:40 2026 +0000 remove the conflict block commit 33d9a7e Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Tue Mar 10 23:22:22 2026 +0000 update versioins commit fbfb896 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Mon Mar 9 16:42:38 2026 -0700 Improved docs for module.py + multiple cleanups in docs (NVIDIA#1478) * Improved docs for module.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix in save_checkpoint and load_checkpoint docstrings Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Improvements in docs Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Moved down section about static capture in physicsnemo.utils.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 13c6fb4 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Mon Mar 9 11:25:44 2026 -0500 Update Datapipes API (NVIDIA#1468) * Trying again with datapipes check in * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.transforms.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Resolve api commits for datapipes * Remove old datapipes api * Add link to the datapipe docs. --------- Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> commit 32f2261 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Fri Mar 6 15:31:53 2026 -0800 Fix unresolved conflict (NVIDIA#1477) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 9a32517 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Fri Mar 6 15:09:50 2026 -0800 Diffusion API docs (NVIDIA#1473) * New API docs for diffusion Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes in nested API references Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Revert some changes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarifications in introduction.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarification in diffusion models.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fixed note sections in preconditioners.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix some broken short-form refs in losses.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Updated DPSScorePredictor class name in samplers.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Enhance clarity and structure of introduction section Refactor introduction section for clarity and readability. Improve formatting and organization of key concepts related to the PhysicsNeMo diffusion framework. * Refactor metrics.rst for improved clarity and formatting Reformatted the description of the module to use bullet points for clarity. Adjusted wording for consistency and readability. * Fix punctuation and enhance clarity in models.rst Corrected punctuation and improved clarity in the documentation. * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> commit d723767 Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Mar 5 18:56:46 2026 -0800 Minor edits to the install guide (NVIDIA#1470) * minor edits to the install guide * add more details * minor doc fix * add transolver to the api index commit 6bb6d04 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Thu Mar 5 12:38:13 2026 -0800 Fixes and renaming in dps_guidance.py (NVIDIA#1471) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 1e14a56 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Wed Mar 4 15:46:15 2026 -0600 Update API docs and structure. (NVIDIA#1337) * Update API docs and structure. * clean-up and re-organization of docs * fix based on new api * remove unused sections * update image paths * Update docs/api/models/diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/operators.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/weather.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.core.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * fix formatting --------- Co-authored-by: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Co-authored-by: Kaustubh Tangsali <ktangsali@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> commit f22cfbf Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Mon Mar 2 17:56:32 2026 -0500 Adds PhysicsNeMo-Mesh API Docs (NVIDIA#1461) * Adds mesh docs on top of RC branch * Update docs/mesh/boundaries.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Apply suggestions from code review Co-authored-by: megnvidia <mmiranda@nvidia.com> * Refine documentation for mesh geometry functions to clarify usage and API exposure for advanced cases. * better subdivision descriptions * clearer docs --------- Co-authored-by: megnvidia <mmiranda@nvidia.com> commit 1e9fdd0 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Fri Feb 27 12:12:02 2026 -0600 GeoTransolver: Fix attention and turn off feature broadcasting. (NVIDIA#1415) * Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests commit 4f0a3cb Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Feb 26 15:00:42 2026 -0800 Wandb fixes (NVIDIA#1458) * Add wandb to requirements * Modify requirements for trimesh and add wandb Updated trimesh version constraint and added wandb. commit 082cd36 Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Feb 26 15:00:16 2026 -0800 Fixes from SFB builds / testing (NVIDIA#1459) * Remove 'perf' extra from physicsnemo installation because NGC containers already include transformer-engine * update deterministic settings commit f6ca818 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Wed Feb 25 13:20:46 2026 -0800 Fix broken cross-ref links in docstrings (NVIDIA#1454) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 47b8ff0 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 15:21:31 2026 -0400 Deprecates `physicsnemo.utils.mesh.py` (NVIDIA#1487) * Adds DeprecationWarning on module. * Changelog update for deprecations commit 74c91f9 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 14:20:25 2026 -0400 Adds docstrings to CombinedOptimizer tests. (NVIDIA#1486)
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…IA#1415) * Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests
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* Fix SongUNet with ShardTensor when using zero embedding (#1432) * Bug fixes for ShardTensor+SongUNet * Handle dtensor spec in sharded view * Fix SongUNet with ShardTensor when using zero embedding * Use buffer for zero embed --------- Co-authored-by: Peter Harrington <48932392+pzharrington@users.noreply.github.com> Co-authored-by: Peter Harrington <pharrington@nvidia.com> * Few fixes (#1434) * comment out e2grid and makani installs * fix dtype * update sfno test * update version * some fixes for healpix tests, update to nc install, fix test dir path mismatch * revert changes to healpix code * don't change the default path * fix graphcast doctest, update doctest command to ignore onnx module because of conflict with onnx.utils * skip pytest for debugging, use floating point comparison for gumbel softmax * make the test more robust * bring back pytests * Bugfix with missing num_steps parameters in CorrDiff generate.py (#1433) * Bugfix with num_steps parameters in CorrDiff generate.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Update examples/weather/corrdiff/conf/base/generation/sampler/stochastic.yaml Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * DSMLoss implementation + minor bugfixes in noise_schedulers.py and pr… (#1430) * DSMLoss implementation + minor bugfixes in noise_schedulers.py and preconditioners.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Bugfix for missing abstract class in noise_schedulers.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Grammar improvements Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Added 'reduction' argument to MSEDSMLoss + added new WeightedMSEDSMLoss Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix dlesym compat map (#1439) * Fix dlesym compat map * modafno fix * format * Few more misc fixes (#1449) * add fixes related to dask, dask is needed for healpix datapipes * update vtk install * add missing dependency * add dask dependency * Apply suggestion from @greptile-apps[bot] Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> --------- Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update requirements.txt (#1448) Add zarr to datapipe example requirements after it was dropped from core reqs. * Update requirements.txt (#1447) The FigConvNet Example needs this preprocessing script, which is how I noticed pyvista and vtk are not listed here as requirements. * Fix broken cross-ref links in docstrings (#1454) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fixes from SFB builds / testing (#1459) * Remove 'perf' extra from physicsnemo installation because NGC containers already include transformer-engine * update deterministic settings * Wandb fixes (#1458) * Add wandb to requirements * Modify requirements for trimesh and add wandb Updated trimesh version constraint and added wandb. * GeoTransolver: Fix attention and turn off feature broadcasting. (#1415) * Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests * Adds PhysicsNeMo-Mesh API Docs (#1461) * Adds mesh docs on top of RC branch * Update docs/mesh/boundaries.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Apply suggestions from code review Co-authored-by: megnvidia <mmiranda@nvidia.com> * Refine documentation for mesh geometry functions to clarify usage and API exposure for advanced cases. * better subdivision descriptions * clearer docs --------- Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update API docs and structure. (#1337) * Update API docs and structure. * clean-up and re-organization of docs * fix based on new api * remove unused sections * update image paths * Update docs/api/models/diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/operators.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/weather.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.core.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * fix formatting --------- Co-authored-by: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Co-authored-by: Kaustubh Tangsali <ktangsali@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> * Fixes and renaming in dps_guidance.py (#1471) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Minor edits to the install guide (#1470) * minor edits to the install guide * add more details * minor doc fix * add transolver to the api index * Diffusion API docs (#1473) * New API docs for diffusion Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes in nested API references Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Revert some changes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarifications in introduction.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarification in diffusion models.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fixed note sections in preconditioners.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix some broken short-form refs in losses.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Updated DPSScorePredictor class name in samplers.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Enhance clarity and structure of introduction section Refactor introduction section for clarity and readability. Improve formatting and organization of key concepts related to the PhysicsNeMo diffusion framework. * Refactor metrics.rst for improved clarity and formatting Reformatted the description of the module to use bullet points for clarity. Adjusted wording for consistency and readability. * Fix punctuation and enhance clarity in models.rst Corrected punctuation and improved clarity in the documentation. * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> * Fix unresolved conflict (#1477) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Update Datapipes API (#1468) * Trying again with datapipes check in * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.transforms.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Resolve api commits for datapipes * Remove old datapipes api * Add link to the datapipe docs. --------- Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Improved docs for module.py + multiple cleanups in docs (#1478) * Improved docs for module.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix in save_checkpoint and load_checkpoint docstrings Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Improvements in docs Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Moved down section about static capture in physicsnemo.utils.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * add wip code 1 * first, kinda working setup * make embeddings configurable * add eos configs * add eos configs * add scripts after succesful 2 stage training. includes updates to gp with different learning rates for different params, matern kernel, test on ood, etc * add combined transolver and GP run * add histogram plotting * add spectral normalization, better consistency, enhanced plotting * add output scale prior, narrower length scale, embedding normalization * learn from embedding states * add files after adding an MLP before the GP * add files to compare GP head and MLP head * add files from a good run, KDE plots of Std Dev make sense * cleanup for pr readiness * updates after merging main * add plots and experiment results * add plots and experiment results * fix license headers * remove unwanted files, fix docstring issues * fix issues with importlinter * remove changes to base files * revert some changes to upstream code * restore normalization.npz from main * address review comments * update docstrings and unify the readme * address rishi's comments --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> Co-authored-by: Jussi Leinonen <jleinonen@nvidia.com> Co-authored-by: Peter Harrington <48932392+pzharrington@users.noreply.github.com> Co-authored-by: Peter Harrington <pharrington@nvidia.com> Co-authored-by: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> Co-authored-by: Corey adams <6619961+coreyjadams@users.noreply.github.com> Co-authored-by: Peter Sharpe <peterdsharpe@gmail.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> Co-authored-by: root <root@eos0065.eos.clusters.nvidia.com>
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…eration (NVIDIA#1494) * Adds the PhysicsNeMo-Mesh changes required for GLOBE 3D * Add dual-tree traversal algorithm to GLOBE model for O(N) kernel evaluations - Introduced a new `ClusterTree` class for spatial decomposition, enabling efficient dual-tree traversal. - Updated `GLOBE` model to utilize the new clustering mechanism, significantly reducing kernel evaluation complexity. - Enhanced `CHANGELOG.md` to reflect the addition of the dual-tree algorithm and its impact on performance. - Added comprehensive tests for the `BarnesHutKernel` and `ClusterTree` functionalities to ensure correctness and performance. - Refactored existing kernel evaluation methods to integrate the new dual-tree approach, improving overall efficiency. This update is crucial for handling large mesh scales effectively, particularly in scenarios with 800k+ faces. * Adds DTT-related changes to AirFRANS train.py * Squashed commit of the following: commit fb4f159 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 23:11:04 2026 -0400 Adds the PhysicsNeMo-Mesh changes required for GLOBE 3D (NVIDIA#1483) * Adds the PhysicsNeMo-Mesh changes required for GLOBE 3D * Fixes docstring example for compute_cell_normals to reflect correct normal vector output in 2D case. * Refactor compute_cell_areas and compute_cell_normals functions to use match-case syntax for improved readability and maintainability. commit 219aca3 Author: Peter Harrington <48932392+pzharrington@users.noreply.github.com> Date: Wed Mar 11 17:23:16 2026 -0700 Fix window shift in pangu, fengwu (NVIDIA#1492) * Fix window shift in pangu, fengwu * changelog commit 26fcdce Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Wed Mar 11 20:20:33 2026 +0000 fix linting issues commit ca15f47 Author: Charlelie Laurent <claurent@nvidia.com> Date: Wed Mar 11 12:08:12 2026 -0700 Resolved conflicts in checkpoint.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 95eca0c Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Tue Mar 10 23:27:40 2026 +0000 remove the conflict block commit 33d9a7e Author: Kaustubh Tangsali <ktangsali@nvidia.com> Date: Tue Mar 10 23:22:22 2026 +0000 update versioins commit fbfb896 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Mon Mar 9 16:42:38 2026 -0700 Improved docs for module.py + multiple cleanups in docs (NVIDIA#1478) * Improved docs for module.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix in save_checkpoint and load_checkpoint docstrings Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Improvements in docs Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Moved down section about static capture in physicsnemo.utils.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 13c6fb4 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Mon Mar 9 11:25:44 2026 -0500 Update Datapipes API (NVIDIA#1468) * Trying again with datapipes check in * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.cae.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Update docs/api/datapipes/physicsnemo.datapipes.transforms.rst Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> * Resolve api commits for datapipes * Remove old datapipes api * Add link to the datapipe docs. --------- Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com> commit 32f2261 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Fri Mar 6 15:31:53 2026 -0800 Fix unresolved conflict (NVIDIA#1477) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 9a32517 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Fri Mar 6 15:09:50 2026 -0800 Diffusion API docs (NVIDIA#1473) * New API docs for diffusion Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes in nested API references Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Revert some changes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some fixes Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarifications in introduction.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Some clarification in diffusion models.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fixed note sections in preconditioners.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Fix some broken short-form refs in losses.py Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Updated DPSScorePredictor class name in samplers.rst Signed-off-by: Charlelie Laurent <claurent@nvidia.com> * Enhance clarity and structure of introduction section Refactor introduction section for clarity and readability. Improve formatting and organization of key concepts related to the PhysicsNeMo diffusion framework. * Refactor metrics.rst for improved clarity and formatting Reformatted the description of the module to use bullet points for clarity. Adjusted wording for consistency and readability. * Fix punctuation and enhance clarity in models.rst Corrected punctuation and improved clarity in the documentation. * Addressed PR comments Signed-off-by: Charlelie Laurent <claurent@nvidia.com> --------- Signed-off-by: Charlelie Laurent <claurent@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> commit d723767 Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Mar 5 18:56:46 2026 -0800 Minor edits to the install guide (NVIDIA#1470) * minor edits to the install guide * add more details * minor doc fix * add transolver to the api index commit 6bb6d04 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Thu Mar 5 12:38:13 2026 -0800 Fixes and renaming in dps_guidance.py (NVIDIA#1471) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 1e14a56 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Wed Mar 4 15:46:15 2026 -0600 Update API docs and structure. (NVIDIA#1337) * Update API docs and structure. * clean-up and re-organization of docs * fix based on new api * remove unused sections * update image paths * Update docs/api/models/diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/operators.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/models/weather.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.core.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.diffusion.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Update docs/api/physicsnemo.utils.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * fix formatting --------- Co-authored-by: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Co-authored-by: Kaustubh Tangsali <ktangsali@nvidia.com> Co-authored-by: megnvidia <mmiranda@nvidia.com> commit f22cfbf Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Mon Mar 2 17:56:32 2026 -0500 Adds PhysicsNeMo-Mesh API Docs (NVIDIA#1461) * Adds mesh docs on top of RC branch * Update docs/mesh/boundaries.rst Co-authored-by: megnvidia <mmiranda@nvidia.com> * Apply suggestions from code review Co-authored-by: megnvidia <mmiranda@nvidia.com> * Refine documentation for mesh geometry functions to clarify usage and API exposure for advanced cases. * better subdivision descriptions * clearer docs --------- Co-authored-by: megnvidia <mmiranda@nvidia.com> commit 1e9fdd0 Author: Corey adams <6619961+coreyjadams@users.noreply.github.com> Date: Fri Feb 27 12:12:02 2026 -0600 GeoTransolver: Fix attention and turn off feature broadcasting. (NVIDIA#1415) * Fix attention and turn off feature broadcasting. * Fix scalar loading shapes * Update volume.yaml Ensure the volume example works out of the box. * Fix Geotransolver inference tests commit 4f0a3cb Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Feb 26 15:00:42 2026 -0800 Wandb fixes (NVIDIA#1458) * Add wandb to requirements * Modify requirements for trimesh and add wandb Updated trimesh version constraint and added wandb. commit 082cd36 Author: Kaustubh Tangsali <71059996+ktangsali@users.noreply.github.com> Date: Thu Feb 26 15:00:16 2026 -0800 Fixes from SFB builds / testing (NVIDIA#1459) * Remove 'perf' extra from physicsnemo installation because NGC containers already include transformer-engine * update deterministic settings commit f6ca818 Author: Charlelie Laurent <84199758+CharlelieLrt@users.noreply.github.com> Date: Wed Feb 25 13:20:46 2026 -0800 Fix broken cross-ref links in docstrings (NVIDIA#1454) Signed-off-by: Charlelie Laurent <claurent@nvidia.com> commit 47b8ff0 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 15:21:31 2026 -0400 Deprecates `physicsnemo.utils.mesh.py` (NVIDIA#1487) * Adds DeprecationWarning on module. * Changelog update for deprecations commit 74c91f9 Author: Peter Sharpe <peterdsharpe@gmail.com> Date: Wed Mar 11 14:20:25 2026 -0400 Adds docstrings to CombinedOptimizer tests. (NVIDIA#1486) * Grammar fix * Docstring fix * Update BarnesHutKernel to use appropriate dtype for zero-valued tensors, ensuring compatibility with AMP autocast settings. * Update MetaData class in model.py to disable JIT and CUDA graphs for improved compatibility with torch.compile and dynamic input handling. * Enhance GLOBE model to support cross-boundary condition (BC) interactions. Updated documentation to reflect changes in self-interaction and cross-BC interaction handling. Modified the `GLOBE` class to compute dual interaction plans for all (source BC, destination BC) pairs, improving efficiency in communication layers. Added tests for multi-BC inference to validate functionality. * Update run.sh script for improved configuration and compatibility - Introduced variables for output name and directory to enhance flexibility. - Updated the AIRFRANS_DATA_DIR path for consistency with dataset location. - Set OMP_NUM_THREADS to 1 to prevent thread oversubscription during data loading. - Simplified head node retrieval for multi-node training setup. * Enhance ClusterTree and BarnesHutKernel for improved internal node handling - Added internal_level_ids and internal_level_offsets to ClusterTree for efficient storage of internal node IDs in CSR-packed level order. - Introduced internal_nodes_per_level property to retrieve internal node IDs grouped by tree depth. - Updated _propagate_centroids_bottom_up to utilize cached internal node levels, improving performance. - Modified BarnesHutKernel to leverage cached level ordering for bottom-up propagation, enhancing efficiency in node strength calculations. - Adjusted lazy compilation settings for MLP and evaluation pipeline to optimize performance during execution. * Adds theta and leaf_size forwarding * Docs fixes, and properly abstracts _ragged.py to deduplicate code. * Enhance global data handling in MultiscaleKernel by adding a copy operation to prevent unintended modifications. * Adds ragged arange tests * Adds traceable ragged_arange variant * Refactor Kernel class to simplify network evaluation and enhance performance by removing lazy compilation. * Always use tensorclass, not dataclass * formatting * Adds minor type hint annotation * Adds in option to do far-field 1st-order expansion (default off, toggleable on) + tests * changelog wording * formatting * Refactor inference and training scripts to remove chunk_size parameter from model calls for improved performance and simplicity. * Switch airfrans to theta 0.0
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PhysicsNeMo Pull Request
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