Skip to content

fix: Copy DICOM files into temp_dir so dcm2niix can process them #41

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
Devguru-codes wants to merge 1 commit into
base: main
Choose a base branch
from
+3 −0
Open

fix: Copy DICOM files into temp_dir so dcm2niix can process them #41

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 3 additions & 0 deletions package/src/pyaslreport/converters/dicom_to_nifti_converter.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
import json
import os
import re
import shutil
import subprocess
import tempfile
import pydicom
Expand All @@ -25,6 +26,8 @@ def convert(dcm_files, nifti_file=None, converted_files_location="/tmp/upload"):

with tempfile.TemporaryDirectory() as temp_dir:
for dcm_file in dcm_files:
# Copy DICOM file into temp_dir so dcm2niix can process it
shutil.copy2(dcm_file, temp_dir)

ds = pydicom.dcmread(dcm_file)
series_number_tag = ds.get((0x0020, 0x0011), None)
Expand Down