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@Rappsilber-Laboratory

Rappsilber Laboratory

Our mission is to develop approaches to study protein structure and interactions in cells and make them universally accessible and useful.

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  1. AlphaLink2 AlphaLink2 Public

    AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

    Python 64 21

  2. XiSearch XiSearch Public

    XiSearch

    Java 17 7

  3. xiRT xiRT Public

    Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides

    Python 11 2

  4. ProteomeHD ProteomeHD Public

    Forked from georgkus/ProteomeHD

    R scripts and data related to the manuscript "Co-regulation map of the human proteome enables identification of protein functions" by Kustatscher et al (https://www.nature.com/articles/s41587-019-0…

    R 8

  5. xiFDR xiFDR Public

    Forked from lutzfischer/xiFDR

    Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs

    Java 6 4

  6. xiview xiview Public

    Forked from martingraham/CLMS-UI

    JavaScript 4 2

Repositories

Showing 10 of 55 repositories
  • denoising Public

    Spectra denoising

    Rappsilber-Laboratory/denoising’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 3, 2026
  • xicommon Public

    common library used by python projects working with mass-spectrometric data

    Rappsilber-Laboratory/xicommon’s past year of commit activity
    Python 0 LGPL-3.0 0 0 1 Updated Mar 30, 2026
  • xiview-k8s Public
    Rappsilber-Laboratory/xiview-k8s’s past year of commit activity
    TypeScript 0 0 0 0 Updated Mar 29, 2026
  • xiview-server Public
    Rappsilber-Laboratory/xiview-server’s past year of commit activity
    HTML 0 Apache-2.0 3 0 0 Updated Mar 27, 2026
  • mzIdentML-polars Public
    Rappsilber-Laboratory/mzIdentML-polars’s past year of commit activity
    Rust 0 Apache-2.0 0 0 0 Updated Mar 26, 2026
  • xiSPEC_website Public Forked from lars-kolbowski/xiSPEC_website
    Rappsilber-Laboratory/xiSPEC_website’s past year of commit activity
    JavaScript 3 Apache-2.0 3 7 0 Updated Mar 26, 2026
  • xiview Public Forked from martingraham/CLMS-UI
    Rappsilber-Laboratory/xiview’s past year of commit activity
    JavaScript 4 GPL-3.0 7 8 0 Updated Mar 25, 2026
  • xiFDR-py Public
    Rappsilber-Laboratory/xiFDR-py’s past year of commit activity
    Python 1 AGPL-3.0 0 2 0 Updated Mar 19, 2026
  • mzidentml-reader Public Forked from lars-kolbowski/xiSPEC_ms_parser
    Rappsilber-Laboratory/mzidentml-reader’s past year of commit activity
    Python 2 Apache-2.0 7 2 0 Updated Mar 13, 2026
  • crosslinking-api Public Forked from PRIDE-Archive/crosslinking-api

    xiview-api provides REST endpoints to access crosslinking resources in PRIDE

    Rappsilber-Laboratory/crosslinking-api’s past year of commit activity
    Python 0 Apache-2.0 4 0 0 Updated Mar 13, 2026
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