Fix/rfd3 duplicate cif atom ids#248

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DeltaDesign wants to merge 3 commits intoRosettaCommons:productionfrom

DeltaDesign:fix/rfd3-duplicate-cif-atom-ids

Commits on Mar 24, 2026

fix: strip duplicate atom_id to fix CIF _atom_site.id (#148)

DeltaDesign
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claude
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test: add regression tests for CIF duplicate atom_id (#148)

DeltaDesign
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claude
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Commits on Apr 18, 2026

style: fix ruff formatting in test_cif_duplicate_ids

DeltaDesign
and
claude
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