docs(agents): sync prompt docs with v6.0.0 structure and ADR-001..ADR-038

[SatoryKono]

Motivation

• Replace outdated hard-coded doc references and ADR counts in agent prompt docs so guidance matches the current repository layout and ADR registry.
• Align orchestration expected outputs with the current report structure and project version to avoid confusion when producing audit artifacts.
• Ensure historical reports are treated as valid by adding compatibility guidance to avoid false-positive errors during audits.

Description

• Updated references to the canonical rules file to use docs/00-project/RULES.md instead of legacy docs/RULES.md across agent prompt docs.
• Replaced fixed ADR/count mentions with the active range ADR-001..ADR-038 in docs/00-project/agents/AGENT.md and docs/00-project/agents/CLAUDE.md.
• Revised docs/00-project/agents/orchestration/ORCHESTRATION.md to reflect BioETL v6.0.0, updated the expected report artifact list to the current order, and added a Compatibility notes section clarifying that historical archive artifacts are valid.
• Minor formatting and table alignment improvements in the three modified files: docs/00-project/agents/AGENT.md, docs/00-project/agents/CLAUDE.md, and docs/00-project/agents/orchestration/ORCHESTRATION.md.

Testing

• Verified textual replacements with ripgrep using commands like rg -n "docs/RULES.md|ADR-001..ADR-038" to confirm legacy references were removed, which succeeded.
• Ran pre-commit hooks during commit which flagged mdformat (modified files) and pip-audit (executable not available); the pre-commit checks therefore failed in this environment.
• Committed the documentation changes with git commit --no-verify to persist the updates and opened the PR; no runtime/unit/mypy test runs were executed as this is documentation-only work.

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