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Add ChatSpatial to Integrative Toolkit#2

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cafferychen777 wants to merge 1 commit intoSindiLab:mainfrom
cafferychen777:add-chatspatial
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Add ChatSpatial to Integrative Toolkit#2
cafferychen777 wants to merge 1 commit intoSindiLab:mainfrom
cafferychen777:add-chatspatial

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Summary

Add ChatSpatial to the Deep Learning Approaches - Integrative Toolkit section.

ChatSpatial is an MCP (Model Context Protocol) server that enables spatial transcriptomics analysis via natural language interaction. It integrates 60+ deep learning and machine learning methods including:

  • Spatial clustering: SpaGCN, STAGATE, GraphST
  • Deconvolution: Cell2location, DestVI, Stereoscope, Tangram
  • Cell communication: LIANA+, CellPhoneDB, CellChat
  • Trajectory: CellRank, Palantir, VeloVI

The MCP architecture allows seamless integration with LLMs (Claude, GPT) for conversational spatial analysis workflows.

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