Search results

max_coverage issue for running IsoQuant

Status: Open.

#391 In ablab/IsoQuant;

· skkjy opened on Apr 21, 2026

Setting --read_group tag:CB still outputs _file_name_ split files

Status: Open.

#390 In ablab/IsoQuant;

· skudashev opened on Apr 20, 2026

Barcode collision in multi-sample single-cell runs

enhancementNew feature or requestNew feature or request

single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipeline

Status: Open.

#388 In ablab/IsoQuant;

· zczali4403 opened on Apr 16, 2026

Running with Parse Biosciences single-cell long-read data using pre-called barcodes

single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipeline

Status: Open.

#387 In ablab/IsoQuant;

· evanwangx opened on Apr 15, 2026

Best practices for multi-experiment isoform quantification and resolving barcode collisions in single-cell Nanopore datasets

questionFurther information is requestedFurther information is requested

single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipeline

Status: Open.

#384 In ablab/IsoQuant;

· ExctOcean opened on Apr 11, 2026

Error: Detected 1 oom_kill event in StepId=537705.batch

third-party problemProblem is related to other tools, libraries, system etcProblem is related to other tools, libraries, system etc

Status: Open.

#382 In ablab/IsoQuant;

· rnaomics opened on Apr 9, 2026

Minimap2 configuration for direct RNA-seq

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#381 In ablab/IsoQuant;

· mfurla opened on Apr 2, 2026

Question: Using IsoQuant after Iso-Seq preprocessing pipeline for bulk long-read RNA-seq

questionFurther information is requestedFurther information is requested

Status: Open.

#380 In ablab/IsoQuant;

· ljh-9809 opened on Mar 27, 2026

Potential adverse effect of small chromosome coverage limit

performanceIssues related to computational perfromanceIssues related to computational perfromance

questionFurther information is requestedFurther information is requested

Status: Open.

#372 In ablab/IsoQuant;

· ljwharbers opened on Mar 10, 2026

Error with running visualize.py

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#369 In ablab/IsoQuant;

· zhujack opened on Feb 6, 2026

wrong gene_id assignment in transcript_models.gtf

algorithmIssue requires algorithmic improvementIssue requires algorithmic improvement

weird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting files

Status: Open.

#363 In ablab/IsoQuant;

· defendant602 opened on Jan 19, 2026

Question regarding parallelisation in IsoQuant

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#359 In ablab/IsoQuant;

· andr-kun opened on Dec 18, 2025