Add METISSE for stellar evolution

.gitignore

@@ -455,3 +455,5 @@ packages/dist
 
 # standard directory for a virtualenv
 env/
+src/amuse_metisse/data
+src/amuse_metisse/src/METISSE

src/amuse/community/metisse/packages/amuse-metisse.amuse_deps

@@ -0,0 +1 @@
+fortran python cmake install download

src/amuse/community/metisse/packages/amuse-metisse/metisse

@@ -0,0 +1 @@
+../../

src/amuse/community/metisse/packages/amuse-metisse/pyproject.toml

@@ -0,0 +1,44 @@
+[project]
+name = "amuse-metisse"
+dynamic = ["version"]
+requires-python = ">=3.7"
+dependencies = [
+    "amuse-framework"
+]
+
+[build-system]
+requires = ["hatchling", "versioningit"]
+build-backend = "hatchling.build"
+
+[tool.hatch.version]
+source = "versioningit"
+
+[tool.versioningit.next-version]
+method = "smallest"
+
+[tool.versioningit.format]
+distance = "{next_version}.dev{distance}+{vcs}{rev}"
+dirty = "{base_version}+d{build_date:%Y%m%d}"
+distance-dirty = "{next_version}.dev{distance}+{vcs}{rev}.d{build_date:%Y%m%d}"
+
+[tool.hatch.build]
+skip-excluded-dirs = true
+
+[tool.hatch.build.targets.wheel]
+include = ["metisse/**/*.py"]
+exclude = [
+    "metisse/packages",
+    "metisse/support",
+    "metisse/src",
+    "metisse/tests"
+    ]
+artifacts = ["metisse/metisse_worker"]
+
+[tool.hatch.build.targets.wheel.sources]
+"metisse" = "amuse/community/metisse"
+
+[tool.pytest.ini_options]
+pythonpath = ["metisse/tests/", "../../../../../tests"]
+
+testpaths = ["metisse/tests"]
+

src/amuse_metisse/Makefile

@@ -0,0 +1,94 @@
+ifneq (,$(filter-out clean distclean, $(MAKECMDGOALS)))
+include support/config.mk
+endif
+
+
+# Detecting dependencies
+support/config.mk:
+	cd support && ./configure
+
+
+# Downloading the code
+##### Remove if not needed #####
+VERSION = 121257ede5486660d9eb5fbb23b2c377f02ae465
+
+metisse.tar.gz:
+	##### Modify URL as needed #####
+	$(DOWNLOAD) https://github.com/TeamMETISSE/METISSE/archive/$(VERSION).tar.gz >$@
+
+PATCHES := $(file < patches/series)
+PATCHES := $(patsubst %,%,$(PATCHES))    # replace newlines with spaces
+
+src/metisse-$(VERSION): metisse.tar.gz
+	##### Modify as needed #####
+	tar xf $<
+	mv metisse-$(VERSION) src
+	##### Apply patches here, if needed #####
+	#patch <patch.patch
+	#for p in $(PATCHES) ; do patch -p1 <patches/$$p ; done
+
+
+# Building the code into a static library
+DEPFLAGS += $(STOPCOND_CFLAGS) $(STOPCONDMPI_CFLAGS) $(AMUSE_MPI_CFLAGS)
+DEPFLAGS += $(FORSOCKETS_CFLAGS) $(SIMPLE_HASH_CFLAGS) $(G6LIB_CFLAGS)
+DEPFLAGS += $(OPENMP_FFLAGS)
+FCFLAGS += $(DEPFLAGS) -ffpe-summary=all -fbacktrace -fcheck=all -g -Wall
+
+LDLIBS += -lm $(STOPCOND_LIBS) $(STOPCONDMPI_LIBS) $(AMUSE_MPI_LIBS)
+LDLIBS += $(FORSOCKETS_LIBS)
+
+CODELIB := libmetisse.a
+
+##### Modify build command as needed #####
+.PHONY: src/METISSE/$(CODELIB)
+src/METISSE/$(CODELIB): | src/METISSE/make
+	$(MAKE) -C src/METISSE/make libmetisse
+
+
+# Building the workers
+metisse_worker.f90: interface.py
+	amusifier --type=f90 interface.py MetisseInterface -o $@
+
+storage.o: storage.f90
+	$(MPIFC) -c -o $@ $(FCFLAGS) $<
+
+metisse_worker.o: metisse_worker.f90 storage.o
+	$(MPIFC) -c -o $@ $(FCFLAGS) $<
+
+metisse_worker: interface.o metisse_worker.o storage.o src/METISSE/$(CODELIB)
+	$(MPIFC) -o $@ $(LDFLAGS) $^ $(LDLIBS)
+
+%.o: %.f90
+	$(MPIFC) -c -o $@ $(FCFLAGS) -Isrc/METISSE/make $<
+
+
+# Which packages contain which workers?
+amuse-metisse_contains: metisse_worker
+
+# Building and installing packages
+develop-%: %_contains
+	support/shared/uninstall.sh $*
+	python -m pip install -e packages/$*
+
+install-%: %_contains
+	support/shared/uninstall.sh $*
+	python -m pip install packages/$*
+
+package-%: %_contains
+	python3 -m pip install -vv --no-cache-dir --no-deps --no-build-isolation --prefix ${PREFIX} packages/$*
+
+test-%:
+	cd packages/$* && pytest
+
+
+# Cleaning up
+.PHONY: clean
+clean:
+	$(MAKE) -C src clean
+	rm -rf *.o *.mod *worker*
+
+.PHONY: distclean
+distclean: clean
+	rm -f support/config.mk support/config.log support/config.status
+	rm -rf support/autom4te.cache
+

src/amuse_metisse/README

@@ -0,0 +1,13 @@
+
+To update/replace the current version of SSE, just unpack a new
+tarball in the sse directory.  The MUSE module uses the SSE
+distribution unchanged, and relies only on the calling sequences to
+zcnsts(), evolv1(), star(), and deltat().
+
+Scientific papers written using this module should reference the paper
+
+"Comprehensive analytic formulae for stellar evolution as a function 
+ of mass and metallicity" 
+ Hurley J.R., Pols O.R., Tout C.A., 2000, MNRAS, 315, 543 
+
+(See sse/README_SSE for more details.)

src/amuse_metisse/__init__.py

@@ -0,0 +1,5 @@
+"""
+Interface for METISSE
+"""
+from .interface import MetisseInterface
+from .interface import Metisse