matchbedsnpsstogenes.py, to get the distance between genes and SNPs. LD_calculationsbQTL.cisEQTL.slurm, to run LD on plink. processLD.outputs.R, to process the output from plink.
corn2code/bQTL
Folders and files
| Name | Name | Last commit date | ||
|---|---|---|---|---|
| Name | Name | Last commit date | ||
|---|---|---|---|---|
matchbedsnpsstogenes.py, to get the distance between genes and SNPs. LD_calculationsbQTL.cisEQTL.slurm, to run LD on plink. processLD.outputs.R, to process the output from plink.