build: update FOCA

[athith-g]

Addresses #171. Version 4.2 is the latest version of the image that runs without errors.

[jvkersch]

@athith-g What errors do you encounter when you try to update to the latest version of MongoDB? Version 4.2 is also quite old.

[athith-g]

@athith-g What errors do you encounter when you try to update to the latest version of MongoDB? Version 4.2 is also quite old.

MongoDB versions 4.4 - 7.0 cause the same error in the protes and protes-worker containers:
pymongo.errors.OperationFailure: ns not found taskStore.tasks

protes-worker traceback:

protes traceback:

[uniqueg]

@athith-g: Did you try to upgrade pymongo? FOCA currently pins it to 3.10.1 but the latest version is 4.7.2. Unless .drop_indexes() was somehow deprecated in MongoDB, I don't think that this is an issue in FOCA or proTES itself, but rather an incompatibility between the used Mongo client and server versions. If a newer pymongo version works with the more recent MongoDB versino and doesn't cause any other issues, I think we can upgrade it in FOCA.

[athith-g]

@uniqueg I updated the pymongo version to 4.7.2 and the pymongo errors discussed previously were resolved. The integration tests fail because Collections.insert() is removed in pymongo 4.0+.

Should I make a PR on FOCA to update the pymongo version and then push the new changes (changing insert() to insert_one() and using mongoDB version 7.0) to this branch?

[uniqueg]

@uniqueg I updated the pymongo version to 4.7.2 and the pymongo errors discussed previously were resolved. The integration tests fail because Collections.insert() is removed in pymongo 4.0+.

Should I make a PR on FOCA to update the pymongo version and then push the new changes (changing insert() to insert_one() and using mongoDB version 7.0) to this branch?

Yes please 🙌

[uniqueg]

I guess we will need to fix FOCA first, then merge your PR on the FOCA repo, create a release and then I think we need to update the FOCA version in this repo (and during that PR upgrade the MongoDB version in the docker-compose.yml).

So I suppose this is blocked for now, but I have already renamed the PR.