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@fish-quant

FISH-quant

Analysis of smFISH images.

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  1. rna2seg rna2seg Public

    rna2seg

    Python 21 2

  2. ComSeg ComSeg Public

    comseg

    Python 24 4

  3. big-fish big-fish Public

    Toolbox for the analysis of smFISH images.

    Python 74 24

Repositories

Showing 10 of 13 repositories
  • autofish-analysis Public
    fish-quant/autofish-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 20, 2026
  • autofish Public

    Python code to control automated iterative FISH system

    fish-quant/autofish’s past year of commit activity
    Python 5 MIT 0 7 0 Updated Jan 29, 2026
  • pipeline_HOX_apiFISH Public
    fish-quant/pipeline_HOX_apiFISH’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 12, 2025
  • rna2seg Public

    rna2seg

    fish-quant/rna2seg’s past year of commit activity
    Python 21 MIT 2 5 0 Updated May 15, 2025
  • ComSeg Public

    comseg

    fish-quant/ComSeg’s past year of commit activity
    Python 24 MIT 4 6 0 Updated Feb 6, 2025
  • tutorial_gene_selection Public
    fish-quant/tutorial_gene_selection’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 28, 2024
  • big-fish Public

    Toolbox for the analysis of smFISH images.

    fish-quant/big-fish’s past year of commit activity
    Python 74 BSD-3-Clause 24 17 2 Updated Oct 31, 2023
  • fq-segmentation Public

    Wrapper code for segmentation of cells and nuclei with Cellpose.

    fish-quant/fq-segmentation’s past year of commit activity
    Python 2 BSD-3-Clause 2 2 1 Updated Jul 19, 2023
  • fq-imjoy Public

    ImJoy plugins to run different smFISH analysis in a user-friendly setting.

    fish-quant/fq-imjoy’s past year of commit activity
    HTML 3 MIT 2 17 0 Updated Mar 8, 2023
  • sim-fish Public

    Toolbox to simulate smFISH images.

    fish-quant/sim-fish’s past year of commit activity
    Python 10 BSD-3-Clause 1 1 0 Updated Sep 5, 2022
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