Support splice site with multiple matching somatic variants#1369
Merged
susannasiebert merged 8 commits intohotfixfrom Mar 11, 2026
Merged
Support splice site with multiple matching somatic variants#1369susannasiebert merged 8 commits intohotfixfrom
susannasiebert merged 8 commits intohotfixfrom
Conversation
…ing of multiple somatic variants overlapping a splice site
…v to prevent pandas from converting TSL to floats
… variants match a splice site
mhoang22
approved these changes
Feb 20, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Closes #1364
This PR also implements an alternate way to solve the problem exposed in #1248 by preventing the TSL fields being converted to floats by pandas.