Refactor pathway analysis instructions and enrichKEGG usage.#95
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cnithin7 wants to merge 1 commit intogriffithlab:masterfrom
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Refactor pathway analysis instructions and enrichKEGG usage.#95cnithin7 wants to merge 1 commit intogriffithlab:masterfrom
cnithin7 wants to merge 1 commit intogriffithlab:masterfrom
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Removed instructions for starting a Docker session and exiting it since the exercise can run directly on R without docker as the packages have been installed without any errors. Updated the section on using the enrichKEGG function for pathway visualization; instead of downloading the KEGG database and running the function locally, the online database is now used directly.
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Removed instructions for starting a Docker session and exiting it, since the exercise can run directly on R without docker as the packages have been installed by Jennie without any errors.
Updated the section on using the enrichKEGG function for pathway visualization; instead of downloading the KEGG database and running the function locally, the online database is now used directly.