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add -z to disable markdup in align#121

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lozybean wants to merge 2 commits intohall-lab:masterfrom
lozybean:master
Open

add -z to disable markdup in align#121
lozybean wants to merge 2 commits intohall-lab:masterfrom
lozybean:master

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@lozybean
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add a param -z in speedseq align, it is useful for amplicon sequencing.

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