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New install via conda environment uses nextflow 26.04 which breaks tests

Status: Open.

#31 In hillerlab/TOGA2;

· jshelly opened on Apr 30, 2026

Exon Misalignments

Status: Open.

#30 In hillerlab/TOGA2;

· TaylorSProbst opened on Apr 29, 2026

CESAR2.0 profiles

Status: Open.

#29 In hillerlab/TOGA2;

· claracavalcanti opened on Apr 29, 2026

Long distance model?

Status: Open.

#28 In hillerlab/TOGA2;

· lauterbur opened on Apr 27, 2026

Issue with toga2.py test

Status: Open.

#20 In hillerlab/TOGA2;

· Arthur0M opened on Mar 6, 2026

Issue with install: Caused by: Cargo metadata failed

Status: Open.

#18 In hillerlab/TOGA2;

· foreignsand opened on Feb 13, 2026

RAxML run failed with the following error:: aLRT replicates must be at least 1000

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In hillerlab/TOGA2;

· ulee-sciscripts opened on Feb 10, 2026

Reference gene count variation

bugSomething isn't workingSomething isn't working

Status: Open.

#14 In hillerlab/TOGA2;

· dhooper1 opened on Feb 2, 2026

availability on dockerstore

Status: Open.

#11 In hillerlab/TOGA2;

· DustinSokolowski opened on Jan 7, 2026

importlib in the requirement.txt

Status: Open.

#3 In hillerlab/TOGA2;

· gq1 opened on Oct 22, 2025