Skip to content
@khanlab

Khan Computational Imaging Lab

  • 22 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 64 22

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 22 16

  3. zarrnii zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    Python 9 4

  4. tar2bids tar2bids Public

    Python 8 9

  5. mp2rage_genUniDen mp2rage_genUniDen Public

    Generates UNI-DEN image from UNI, Inv1 and Inv2 images

    MATLAB 6 1

  6. scattr scattr Public

    BIDS app for structural connectivity between targeted regions

    Python 6 5

Repositories

Showing 10 of 131 repositories
  • cfmm2tar Public

    Tools for dicom-server retrieval, tarballing and conversion to bids

    khanlab/cfmm2tar’s past year of commit activity
    Python 4 GPL-3.0 4 2 1 Updated Mar 5, 2026
  • cfmm2bids Public

    Snakemake workflow for pulling cfmm dicom server data into bids

    khanlab/cfmm2bids’s past year of commit activity
    Python 0 1 3 8 Updated Mar 5, 2026
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii’s past year of commit activity
    Python 9 4 3 9 Updated Mar 5, 2026
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Python 5 2 5 5 Updated Mar 4, 2026
  • vesselFM Public Forked from bwittmann/vesselFM

    A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.

    khanlab/vesselFM’s past year of commit activity
    Python 0 GPL-3.0 23 0 0 Updated Mar 4, 2026
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 22 MIT 16 23 9 Updated Mar 3, 2026
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 17 1 1 Updated Mar 1, 2026
  • analyze_zona_dmri Public
    khanlab/analyze_zona_dmri’s past year of commit activity
    Python 0 1 0 0 Updated Feb 27, 2026
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 64 MIT 22 26 (1 issue needs help) 4 Updated Feb 27, 2026
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 5 MIT 2 9 (3 issues need help) 4 Updated Feb 26, 2026
View all repositories

Top languages

Loading…