Skip to content

Make input method for MMCIFParser and MMCIFReader more flexible#4

Merged
marinegor merged 4 commits intomarinegor:feature/mmciffrom
ljwoods2:mmcif-parse
Nov 17, 2025
Merged

Make input method for MMCIFParser and MMCIFReader more flexible#4
marinegor merged 4 commits intomarinegor:feature/mmciffrom
ljwoods2:mmcif-parse

Conversation

@ljwoods2
Copy link
Copy Markdown

@ljwoods2 ljwoods2 commented Nov 16, 2025

@marinegor This will allow the MMCIFParser and MMCIFReader to accept any valid mda topology/trajectory input instead of just a filepath string- so pathlib.Path, StringIO, mda.lib.util.NamedStream, for example

I added a test for legacy PDB parsing for these same input methods, but feel free to remove since it sounds like that might be out of scope

MDAnalysis#4712

@ljwoods2 ljwoods2 changed the base branch from develop to feature/mmcif November 16, 2025 01:06
@marinegor marinegor merged commit 959d78b into marinegor:feature/mmcif Nov 17, 2025
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants