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Pull requests: nf-core/modules

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Pull requests list

Swap gem2 to topics size/m
#11330 opened Apr 28, 2026 by SPPearce Contributor Loading…
17 tasks
feat: add stub blocks to 41 modules (#4570)
#11323 opened Apr 27, 2026 by HReed1 Loading…
4 of 12 tasks
fix(trimgalore): isolate --paired intermediates in a subdir
#11315 opened Apr 27, 2026 by pinin4fjords Member Draft
1 of 2 tasks
new module for downloading hmmdb for bigslice
#11313 opened Apr 27, 2026 by SkyLexS Contributor Loading…
13 of 17 tasks
fix(modules): replace invalid touch .gz stubs with valid gzip
#11312 opened Apr 26, 2026 by HReed1 Loading…
4 tasks done
added pcne module
#11307 opened Apr 25, 2026 by riccabolla Draft
17 tasks
nf-core-module-dev claude init attempt for hifiadapterfilt size/m
#11306 opened Apr 25, 2026 by vagkaratzas Contributor Loading…
12 of 17 tasks
[Won't merge] Codex checkpoint - to compare against Claude size/m
#11305 opened Apr 25, 2026 by vagkaratzas Contributor Draft
17 tasks
[DO NOT MERGE] test new character-level diffs
#11299 opened Apr 24, 2026 by mashehu Contributor Loading…
Add new module gatk4/cleansam size/l
#11288 opened Apr 24, 2026 by sofiademmou Contributor Loading…
12 of 17 tasks
New module: modkit/extract/calls
#11286 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/extract/full
#11285 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/validate
#11284 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
New module: modkit/entropy
#11283 opened Apr 24, 2026 by sahuno Loading…
9 tasks done
Migrate hlala to topic channels and bump version
#11282 opened Apr 23, 2026 by jonasscheid Contributor Loading…
10 of 14 tasks
Add module: Percolator
#11273 opened Apr 23, 2026 by julianu Contributor Loading…
12 of 17 tasks
Improve mirtop stats script with GFF check
#11262 opened Apr 22, 2026 by d-jch Contributor Loading…
bots add new module for svdss/index size/m
#11253 opened Apr 21, 2026 by vagkaratzas Contributor Loading…
13 of 17 tasks
fix seqkit sample for paired-end reads size/s
#11249 opened Apr 21, 2026 by bounlu Contributor Loading…
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