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1 change: 1 addition & 0 deletions .github/workflows/cookbook_preproc.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -92,6 +92,7 @@ jobs:
uses: mamba-org/setup-micromamba@v2
with:
environment-file: devtools/conda-envs/examples_env.yml
cache-downloads: true

- name: Pre-process and execute notebooks
run: |
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27 changes: 14 additions & 13 deletions devtools/conda-envs/examples_env.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,15 +3,15 @@ channels:
- conda-forge
dependencies:
# Examples
- openff-toolkit-examples>=0.16.9
- openff-interchange ~=0.4.2
- openff-nagl
- openff-toolkit-examples =0.18
- openff-interchange =0.5
- openff-nagl =0.5
# openff-fragmenter
# Runtime
- pip
- python=3.11
- jupyterlab>=4
- ipywidgets>=8
- jupyterlab
- ipywidgets
# Cookbook
- gitpython
- nbconvert
Expand All @@ -20,19 +20,20 @@ dependencies:
- packaging
# Other deps
- openff-qcsubmit
- openmmforcefields ~=0.14.2
- openmmforcefields =0.15
- gromacs >=2021=nompi*
- lammps
- rich
- jax
- parmed
- nglview ~=3.0.6
- psi4
# NAGL training dependencies
- parmed >=4.3.1
- nglview
- psi4 =1.9.1
- libint =2.9
# NAGL training dependencies - constraints are just to help solver
# hopefully will be replaced by openff-nagl-training in future
- pyarrow
- openff-recharge
- pyarrow =17
- openff-recharge =0.5.3
- dask-jobqueue
- dgl
- dgl =2.3.0
# torchdata.datapipes was removed in 0.10.0
- torchdata<=0.9.0
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