CMO Cell-Free DNA (cfDNA) Informatics Team

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30 packages

gatk
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

157k
gbcms
Published May 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/gbcms

49.1k
fgbio
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

45.7k
biometrics
Published Mar 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/biometrics

36.3k
bedtools
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

14.4k
sequence_qc
Published Apr 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

10.6k
postprocessing_variant_calls
Published May 24, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/postprocessing_variant_calls

8.62k
abra2
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

7k
bwa
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

6.84k
fastp
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

5.14k
mosdepth
Published Mar 4, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.95k
fgbio_postprocessing
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.33k
cci_utils
Published May 27, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.2k
multiqc
Published May 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/MultiQC

2.95k
genotype_variants
Published Jan 16, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/genotype_variants

2.81k
access_utils
Published Jun 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/access_utils

1.39k
vcf2maf
Published Mar 8, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

908
genomenexus
Published Mar 18, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

750
igv_snapshot
Published Aug 6, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/igv_snapshot

733
genomenexus_annotation-pipeline
Published Mar 19, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

663
athena
Published Jun 1, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/athena

646
krewlyzer
Published Jul 22, 2025 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/krewlyzer

593
vardictjava
Published Nov 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

460
bcftools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

449
mutect1
Published Dec 20, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/mutect1

391
delly
Published Apr 15, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

368
waltz
Published Dec 12, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

345
samtools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

345
merge_fastq
Published Mar 25, 2025 by CMO Cell-Free DNA (cfDNA) Informatics Team

321
msisensor-ct
Published Sep 26, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/msisensor-ct

281