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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 624

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 239 204

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 182 31

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 47 43

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 36 10

Repositories

Showing 10 of 63 repositories
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 239 204 10 39 Updated Feb 11, 2026
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 0 CC-BY-SA-4.0 2 2 0 Updated Feb 10, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 36 MIT 10 2 0 Updated Feb 9, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 47 MIT 43 41 4 Updated Feb 9, 2026
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 182 MIT 31 11 1 Updated Feb 9, 2026
  • snakemake-storage-plugin-xrootd Public

    A Snakemake storage plugin for handling input and output via XRootD

    snakemake/snakemake-storage-plugin-xrootd’s past year of commit activity
    Python 1 MIT 3 1 0 Updated Feb 8, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,702 MIT 624 1,165 (1 issue needs help) 87 Updated Feb 5, 2026
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 4 MIT 12 2 8 Updated Jan 26, 2026
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep’s past year of commit activity
    Python 0 MIT 5 0 1 Updated Jan 19, 2026
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 24 MPL-2.0 13 14 6 Updated Jan 14, 2026
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