feat: add missing MCP server permissions for Claude Code#371
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Add allow-list entries for all glyph MCP servers (mcp-nixos, deepwiki, kagi, aws-knowledge) and missing tools from basic-memory and graphite. Fix context7 tool name rename (get-library-docs → query-docs). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Summary
get-library-docs→query-docs)Test plan
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