COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Actor-oriented and tie-based network event models in R

Course materials for module on modelling networks. John McLevey. 2024. Introduction to Computational Social Science with Python. GESIS Fall Seminar in Computational Social Science.

TBN_learning is a MATLAB implemented hybrid algorithm for learning the structure of transcriptional Bayesian networks on a genome-wide scale.

REplan provides a set of tools to ease the setup and simulation of grid expansion planning.

Riparian Condition Assessment Tools

COSMOS: A Simulation Framework for Swarm-Based Orchestration in the Edge-Fog-Cloud Continuum

TCL network simulation scripts in ns 2.35

Updated version of the 2echelon model available in https://github.com/Horizon-LEAD/2echelon. Improved version that calculates 1echelon distribution networks and 2echelon distribution networks

The model is based on Daganzo's distance estimation formula to provide last-mile logistics services operators with a rough estimation of the resources required for distributing in a specific zone. It returns the number of vehicles, the total distance drove and delivery time for distributing to all the nodes within the zone. The routes start and …

Automated Translation of Network Data into Declaration Files Compatible with LIM and limSolve

A repository of RNA-seq & microarray pipelines, network modeling, and ML-based biomarker validation projects from my 2nd–3rd year undergrad.