feat: add PermeabilitySpecification as an high-level FieldSpecification

src/coreComponents/fieldSpecification/AquiferBoundaryCondition.cpp

@@ -300,7 +300,7 @@ AquiferBoundaryCondition::KernelWrapper AquiferBoundaryCondition::createKernelWr
                                                   pressureInfluenceFunction.createKernelWrapper() );
 }
 
-REGISTER_CATALOG_ENTRY( FieldSpecificationBase, AquiferBoundaryCondition, string const &, Group * const )
+REGISTER_CATALOG_ENTRY( FieldSpecificationABC, AquiferBoundaryCondition, string const &, Group * const )
 
 
 } /* namespace geos */

src/coreComponents/fieldSpecification/CMakeLists.txt

@@ -25,12 +25,16 @@ Contains:
 set( fieldSpecification_headers
      DirichletBoundaryCondition.hpp
      EquilibriumInitialCondition.hpp
+     FieldSpecificationABC.hpp
      FieldSpecificationBase.hpp
+     FieldSpecificationFactory.hpp
      FieldSpecificationManager.hpp
      SourceFluxBoundaryCondition.hpp
      TractionBoundaryCondition.hpp
      AquiferBoundaryCondition.hpp
      PerfectlyMatchedLayer.hpp
+     PermeabilitySpecification.hpp
+     PermeabilitySpecificationFactory.hpp
    )
 
 #
@@ -39,12 +43,15 @@ set( fieldSpecification_headers
 set( fieldSpecification_sources
      DirichletBoundaryCondition.cpp
      EquilibriumInitialCondition.cpp
+     FieldSpecificationABC.cpp
      FieldSpecificationBase.cpp
      FieldSpecificationManager.cpp
      SourceFluxBoundaryCondition.cpp
      TractionBoundaryCondition.cpp
      AquiferBoundaryCondition.cpp
      PerfectlyMatchedLayer.cpp
+     PermeabilitySpecification.cpp
+     PermeabilitySpecificationFactory.cpp
    )
 
 set( dependencyList ${parallelDeps} mesh )

src/coreComponents/fieldSpecification/DirichletBoundaryCondition.cpp

@@ -37,6 +37,6 @@ DirichletBoundaryCondition::~DirichletBoundaryCondition()
 
 
 
-REGISTER_CATALOG_ENTRY( FieldSpecificationBase, DirichletBoundaryCondition, string const &, Group * const )
+REGISTER_CATALOG_ENTRY( FieldSpecificationABC, DirichletBoundaryCondition, string const &, Group * const )
 
 } /* namespace geos */

src/coreComponents/fieldSpecification/EquilibriumInitialCondition.cpp

@@ -243,7 +243,7 @@ void EquilibriumInitialCondition::initializePreSubGroups()
   }
 }
 
-REGISTER_CATALOG_ENTRY( FieldSpecificationBase, EquilibriumInitialCondition, string const &, Group * const )
+REGISTER_CATALOG_ENTRY( FieldSpecificationABC, EquilibriumInitialCondition, string const &, Group * const )
 
 
 } /* namespace geos */

src/coreComponents/fieldSpecification/FieldSpecificationABC.cpp

@@ -0,0 +1,36 @@
+/*
+ * ------------------------------------------------------------------------------------------------------------
+ * SPDX-License-Identifier: LGPL-2.1-only
+ *
+ * Copyright (c) 2016-2024 Lawrence Livermore National Security LLC
+ * Copyright (c) 2018-2024 TotalEnergies
+ * Copyright (c) 2018-2024 The Board of Trustees of the Leland Stanford Junior University
+ * Copyright (c) 2023-2024 Chevron
+ * Copyright (c) 2019-     GEOS/GEOSX Contributors
+ * All rights reserved
+ *
+ * See top level LICENSE, COPYRIGHT, CONTRIBUTORS, NOTICE, and ACKNOWLEDGEMENTS files for details.
+ * ------------------------------------------------------------------------------------------------------------
+ */
+
+#include "FieldSpecificationABC.hpp"
+
+namespace geos
+{
+using namespace dataRepository;
+
+FieldSpecificationABC::FieldSpecificationABC( string const & name, Group * parent ):
+  Group( name, parent )
+{}
+
+FieldSpecificationABC::~FieldSpecificationABC()
+{}
+
+FieldSpecificationABC::CatalogInterface::CatalogType &
+FieldSpecificationABC::getCatalog()
+{
+  static FieldSpecificationABC::CatalogInterface::CatalogType catalog;
+  return catalog;
+}
+
+}

src/coreComponents/fieldSpecification/FieldSpecificationABC.hpp

@@ -0,0 +1,105 @@
+/*
+ * ------------------------------------------------------------------------------------------------------------
+ * SPDX-License-Identifier: LGPL-2.1-only
+ *
+ * Copyright (c) 2016-2024 Lawrence Livermore National Security LLC
+ * Copyright (c) 2018-2024 TotalEnergies
+ * Copyright (c) 2018-2024 The Board of Trustees of the Leland Stanford Junior University
+ * Copyright (c) 2023-2024 Chevron
+ * Copyright (c) 2019-     GEOS/GEOSX Contributors
+ * All rights reserved
+ *
+ * See top level LICENSE, COPYRIGHT, CONTRIBUTORS, NOTICE, and ACKNOWLEDGEMENTS files for details.
+ * ------------------------------------------------------------------------------------------------------------
+ */
+
+/**
+ * @file FieldSpecificationABC.hpp
+ */
+
+#ifndef GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONABC_HPP
+#define GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONABC_HPP
+
+
+#include "common/DataTypes.hpp"
+#include "dataRepository/Group.hpp"
+#include "functions/FunctionBase.hpp"
+#include "functions/FunctionManager.hpp"
+
+namespace geos
+{
+class Function;
+
+
+/**
+ * @class FieldSpecificationABC
+ */
+class FieldSpecificationABC : public dataRepository::Group
+{
+public:
+
+  /**
+   * @defgroup alias and functions to defined statically initialized catalog
+   * @{
+   */
+
+  /**
+   * alias to define the catalog type for this abstract type
+   */
+  using CatalogInterface = dataRepository::CatalogInterface< FieldSpecificationABC,
+                                                             string const &,
+                                                             dataRepository::Group * const >;
+
+  /**
+   * @brief static function to return static catalog.
+   * @return the static catalog to create derived types through the static factory methods.
+   */
+  static CatalogInterface::CatalogType & getCatalog();
+
+  /**
+   * @brief return the catalog name
+   * @return the catalog name
+   */
+  virtual const string getCatalogName() const = 0;
+
+  /**
+   * @}
+   */
+
+
+  /**
+   * @brief constructor
+   * @param name the name of the FieldSpecificationABC in the data repository
+   * @param parent the parent group of this group.
+   */
+  FieldSpecificationABC( string const & name, dataRepository::Group * parent );
+
+  /**
+   * destructor
+   */
+  virtual ~FieldSpecificationABC() override;
+
+
+  /// Deleted copy constructor
+  FieldSpecificationABC( FieldSpecificationABC const & ) = delete;
+
+  /// Defaulted move constructor
+  FieldSpecificationABC( FieldSpecificationABC && ) = default;
+
+  /// deleted copy assignment
+  FieldSpecificationABC & operator=( FieldSpecificationABC const & ) = delete;
+
+  /// deleted move assignement
+  FieldSpecificationABC & operator=( FieldSpecificationABC && ) = delete;
+
+  /**
+   * @brief View keys
+   */
+  struct viewKeyStruct
+  {};
+
+};
+
+}
+
+#endif //GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONABC_HPP

src/coreComponents/fieldSpecification/FieldSpecificationBase.cpp

@@ -22,7 +22,7 @@ namespace geos
 using namespace dataRepository;
 
 FieldSpecificationBase::FieldSpecificationBase( string const & name, Group * parent ):
-  Group( name, parent )
+  FieldSpecificationABC( name, parent )
 {
   setInputFlags( InputFlags::OPTIONAL_NONUNIQUE );
 
@@ -102,13 +102,6 @@ FieldSpecificationBase::FieldSpecificationBase( string const & name, Group * par
 FieldSpecificationBase::~FieldSpecificationBase()
 {}
 
-FieldSpecificationBase::CatalogInterface::CatalogType &
-FieldSpecificationBase::getCatalog()
-{
-  static FieldSpecificationBase::CatalogInterface::CatalogType catalog;
-  return catalog;
-}
-
 
 
 void FieldSpecificationBase::setMeshObjectPath( Group const & meshBodies )
@@ -131,6 +124,6 @@ void FieldSpecificationBase::setMeshObjectPath( Group const & meshBodies )
 
 
 
-REGISTER_CATALOG_ENTRY( FieldSpecificationBase, FieldSpecificationBase, string const &, Group * const )
+REGISTER_CATALOG_ENTRY( FieldSpecificationABC, FieldSpecificationBase, string const &, Group * const )
 
 }

src/coreComponents/fieldSpecification/FieldSpecificationBase.hpp

@@ -31,6 +31,7 @@
 #include "mesh/MeshObjectPath.hpp"
 #include "functions/FunctionManager.hpp"
 #include "common/GEOS_RAJA_Interface.hpp"
+#include "FieldSpecificationABC.hpp"
 
 namespace geos
 {
@@ -41,21 +42,10 @@ class Function;
  * @class FieldSpecificationBase
  * A class to hold values for and administer a single boundary condition
  */
-class FieldSpecificationBase : public dataRepository::Group
+class FieldSpecificationBase : public FieldSpecificationABC
 {
 public:
 
-  /**
-   * @defgroup alias and functions to defined statically initialized catalog
-   * @{
-   */
-
-  /**
-   * alias to define the catalog type for this base type
-   */
-  using CatalogInterface = dataRepository::CatalogInterface< FieldSpecificationBase,
-                                                             string const &,
-                                                             dataRepository::Group * const >;
   /**
    * @enum  SetErrorMode
    * @brief Indicate the error handling mode.
@@ -67,12 +57,6 @@ class FieldSpecificationBase : public dataRepository::Group
     warning
   };
 
-  /**
-   * @brief static function to return static catalog.
-   * @return the static catalog to create derived types through the static factory methods.
-   */
-  static CatalogInterface::CatalogType & getCatalog();
-
   /**
    * @brief Static Factory Catalog Functions
    * @return the catalog name
@@ -88,10 +72,6 @@ class FieldSpecificationBase : public dataRepository::Group
     return FieldSpecificationBase::catalogName();
   }
 
-  /**
-   * @}
-   */
-
 
   /**
    * @brief constructor
@@ -524,6 +504,24 @@ class FieldSpecificationBase : public dataRepository::Group
     m_scale = scale;
   }
 
+  /**
+   * Mutator
+   * @param[in] component The component index 
+   */
+  void setComponent( int component )
+  {
+    m_component = component;
+  }
+
+  /**
+   * Mutator
+   * @param[in] functionName The name of the function
+   */
+  void setFunctionName( string const & functionName )
+  {
+    m_functionName = functionName;
+  }
+
   /**
    * Mutator
    * @param[in] isInitialCondition Logical value to indicate if it is an initial condition

src/coreComponents/fieldSpecification/FieldSpecificationFactory.hpp

@@ -0,0 +1,55 @@
+/*
+ * ------------------------------------------------------------------------------------------------------------
+ * SPDX-License-Identifier: LGPL-2.1-only
+ *
+ * Copyright (c) 2016-2024 Lawrence Livermore National Security LLC
+ * Copyright (c) 2018-2024 TotalEnergies
+ * Copyright (c) 2018-2024 The Board of Trustees of the Leland Stanford Junior University
+ * Copyright (c) 2023-2024 Chevron
+ * Copyright (c) 2019-     GEOS/GEOSX Contributors
+ * All rights reserved
+ *
+ * See top level LICENSE, COPYRIGHT, CONTRIBUTORS, NOTICE, and ACKNOWLEDGEMENTS files for details.
+ * ------------------------------------------------------------------------------------------------------------
+ */
+
+/**
+ * @file FieldSpecificationFactory.hpp
+ */
+
+#ifndef GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONFACTORY_HPP
+#define GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONFACTORY_HPP
+
+
+#include "common/DataTypes.hpp"
+#include "dataRepository/Group.hpp"
+#include "FieldSpecificationABC.hpp"
+
+namespace geos
+{
+
+/**
+ * @class FieldSpecificationFactory
+ */
+class FieldSpecificationFactory
+{
+public:
+
+  /// @brief Generate FieldSpecifications based on the given "higher-level"
+  ///        specification
+  /// @param specification The higher-level specification used as a blueprint
+  ///                      to create FieldSpecification
+  /// @param manager The parent to store the created FieldSpecifications
+  virtual void generate( FieldSpecificationABC const & specification,
+                         dataRepository::Group & manager ) const = 0;
+
+  /// @return The key that represents the element this factory is about.
+  /// Purpose: link the factory to the specification it uses.
+  virtual string const getKey() const = 0;
+
+};
+
+}
+
+
+#endif //GEOS_FIELDSPECIFICATION_FIELDSPECIFICATIONFACTORY_HPP