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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps): bump black from 25.1.0 to 26.3.1 in /cli in the uv group across 1 directory dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#6132 opened Mar 12, 2026 by dependabot bot Loading…
feat(website): added display names for file categories deployment Code changes targetting the deployment infrastructure website Tasks related to the web application
#6131 opened Mar 12, 2026 by tombch Loading…
3 tasks
1
testing deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#6130 opened Mar 12, 2026 by anna-parker • Draft
3 tasks
Add more funders preview Triggers a deployment to argocd
#6129 opened Mar 12, 2026 by emmahodcroft Loading…
2
chore(deps): bump devalue from 5.6.3 to 5.6.4 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6128 opened Mar 12, 2026 by dependabot bot Loading…
chore(deps): bump devalue from 5.6.3 to 5.6.4 in /docs dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6127 opened Mar 12, 2026 by dependabot bot Loading…
feat(website): support for SeqSet searches in search bar preview Triggers a deployment to argocd website Tasks related to the web application
#6126 opened Mar 12, 2026 by tombch Loading…
3 tasks
8
chore(deps): bump docker/build-push-action from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#6115 opened Mar 11, 2026 by dependabot bot Loading…
feat(ingest, workflows): add GCA downloads to mirror and enable use as segment grouping overrides in ingest deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline preview Triggers a deployment to argocd
#6112 opened Mar 11, 2026 by anna-parker Loading…
2 of 3 tasks
1
14
feat(website): show sequence specific filters without requiring an associated segment preview Triggers a deployment to argocd website Tasks related to the web application
#6108 opened Mar 10, 2026 by anna-parker Loading…
1
3
feat(website): use segment displayName and collapse sequences container if an organism is muti-segmented deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6106 opened Mar 10, 2026 by anna-parker Loading…
2 tasks done
7
feat(deposition): deduplicate author affiliations and add tests deposition related to ENA/INSDC deposition
#6073 opened Mar 3, 2026 by anna-parker Loading…
1 of 3 tasks
2
feat(prepro): refactor prepro to split up backend internal metadata from customizable metadata fields preprocessing Issues related to the preprocessing component
#6071 opened Mar 3, 2026 by anna-parker Loading…
2 of 3 tasks
8
feat(website): add Required Segments filter for multi-segmented viruses website Tasks related to the web application
#6057 opened Feb 27, 2026 by anna-parker Loading…
3 tasks
1
6
feat(deposition): always add timestamp to assemblyname and get test param directly from config deposition related to ENA/INSDC deposition
#6053 opened Feb 27, 2026 by anna-parker Loading…
3 tasks done
5
theo-exp deployment Code changes targetting the deployment infrastructure
#6011 opened Feb 21, 2026 by theosanderson • Draft
feat(preprocessing): preserve attached files through nextclade pipeline deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component
#6008 opened Feb 19, 2026 by theosanderson-agent Loading…
2 tasks
Custom lineage functions preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd website Tasks related to the web application
#6004 opened Feb 19, 2026 by anna-parker • Draft
3 tasks
1
2
feat(integration-tests): add tests for uncovered UI features e2e E2E test related tests Test related issues website Tasks related to the web application
#5995 opened Feb 17, 2026 by theosanderson-agent • Draft
3 of 4 tasks
8
demo: use cdk8s for deployment deployment Code changes targetting the deployment infrastructure
#5994 opened Feb 17, 2026 by theosanderson-agent • Draft
2
chore(website): remove zodios dependency and upgrade to zod v4 backend related to the loculus backend component website Tasks related to the web application
#5990 opened Feb 16, 2026 by theosanderson-agent • Draft
5 of 9 tasks
4
[PoC] Website/field selector modal website Tasks related to the web application
#5984 opened Feb 15, 2026 by rneher Loading…
3
fix(website): replace unsafe typecasts with runtime typeof checks website Tasks related to the web application
#5974 opened Feb 13, 2026 by theosanderson-agent • Draft
2 of 3 tasks
1
feat(deployment, backend, silo-importer): use incremental update option for silo imports
#5969 opened Feb 12, 2026 by theosanderson • Draft
2 of 3 tasks
1
45
[DO NOT MERGE] Test with trusting self-signed certificates backend related to the loculus backend component
#5946 opened Feb 5, 2026 by chaoran-chen • Draft
3 tasks
2
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