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feat: seqkit/sample nf-core module#11119

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emmcauley wants to merge 2 commits intonf-core:masterfrom
fulcrumgenomics:em_seqkit_sample
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feat: seqkit/sample nf-core module#11119
emmcauley wants to merge 2 commits intonf-core:masterfrom
fulcrumgenomics:em_seqkit_sample

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@emmcauley emmcauley commented Apr 5, 2026

PR checklist

Closes #9984

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@emmcauley emmcauley requested review from a team as code owners April 5, 2026 00:21
@emmcauley emmcauley force-pushed the em_seqkit_sample branch 3 times, most recently from 83da2ec to 8f7178a Compare April 5, 2026 13:05
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new module: seqkit/sample

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